MmuALTA0020643-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000048728 | Zfp454
Description
zinc finger protein 454 [Source:MGI Symbol;Acc:MGI:2679253]
Coordinates
chr11:50696686-50697313:-
Coord C1 exon
chr11:50697187-50697313
Coord A exon
NA
Coord C2 exon
chr11:50696686-50696775
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
TCTTGTTCCTTCACTAGCAGGTC
3' ss Score
7.23
Exon sequences
Seq C1 exon
GACTTGGTGACCTTCAAGGATGTGGCCGTGCTTTTCACCCAGGAGGAGTGGGGTCAGCTGAGCTCTGCCCAGAGGGCCTTGTATCAGGATGTGATGCTAGAGAACTACAGTAACCTGGTCTCACTGG
Seq A exon
NA
Seq C2 exon
GTCTCTTAGGATCCCAACCAGATATGTTCTTTCCCCTGGAGGAAGTGGAAGAATGTGTGTCAGAGGAGGCTCCTGAGGGCTTTGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048728-4-4,4-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGGCCTTGTATCAGGA
R:
CCACTTCCTCCAGGGGAAAGA
Band lengths:
107-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: