MmuEX0053362 @ mm9
Exon Skipping
Gene
ENSMUSG00000048728 | Zfp454
Description
zinc finger protein 454 [Source:MGI Symbol;Acc:MGI:2679253]
Coordinates
chr11:50697187-50700000:-
Coord C1 exon
chr11:50699871-50700000
Coord A exon
chr11:50699675-50699780
Coord C2 exon
chr11:50697187-50697313
Length
106 bp
Sequences
Splice sites
3' ss Seq
ACCAGAAGCTTCCTTTCCAGCCA
3' ss Score
1.88
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
Exon sequences
Seq C1 exon
GAGTGCAGATGCTTCTAGCCAGAGAACCCCAGCAATTGTAAAGCTCCTCCCCTGCCTCCTTCCTACTCAATGCTCCTCAGCTCACCAGAGAAAAGGAATGGCTGTCAGCCAGCTCCCGGCCCTGGTCCAG
Seq A exon
CCACCCCCAAAGACCCCAGCTGCTCCCTCCCACCACACATCTCCTCCTAGTGAGCTTTAGAGCTTTCTGTAAGGCATGAAAGTGGCACATCTGGGCAGGATTCTAG
Seq C2 exon
GACTTGGTGACCTTCAAGGATGTGGCCGTGCTTTTCACCCAGGAGGAGTGGGGTCAGCTGAGCTCTGCCCAGAGGGCCTTGTATCAGGATGTGATGCTAGAGAACTACAGTAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048728_MULTIEX1-1/4=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCAGAGAACCCCAGCAAT
R:
CCAGTGAGACCAGGTTACTGT
Band lengths:
242-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: