MmuEX0053362 @ mm10
Exon Skipping
Gene
ENSMUSG00000048728 | Zfp454
Description
zinc finger protein 454 [Source:MGI Symbol;Acc:MGI:2679253]
Coordinates
chr11:50883685-50886498:-
Coord C1 exon
chr11:50886369-50886498
Coord A exon
chr11:50886173-50886278
Coord C2 exon
chr11:50883685-50883811
Length
106 bp
Sequences
Splice sites
3' ss Seq
ACCAGAAGCTTCCTTTCCAGCCA
3' ss Score
1.88
5' ss Seq
TAGGTTAGT
5' ss Score
5.5
Exon sequences
Seq C1 exon
GAGTGCAGATGCTTCTAGCCAGAGAACCCCAGCAATTGTAAAGCTCCTCCCCTGCCTCCTTCCTACTCAATGCTCCTCAGCTCACCAGAGAAAAGGAATGGCTGTCAGCCAGCTCCCGGCCCTGGTCCAG
Seq A exon
CCACCCCCAAAGACCCCAGCTGCTCCCTCCCACCACACATCTCCTCCTAGTGAGCTTTAGAGCTTTCTGTAAGGCATGAAAGTGGCACATCTGGGCAGGATTCTAG
Seq C2 exon
GACTTGGTGACCTTCAAGGATGTGGCCGTGCTTTTCACCCAGGAGGAGTGGGGTCAGCTGAGCTCTGCCCAGAGGGCCTTGTATCAGGATGTGATGCTAGAGAACTACAGTAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048728_MULTIEX1-1/4=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCCAGAGAACCCCAGCAAT
R:
CCAGTGAGACCAGGTTACTGT
Band lengths:
242-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types