MmuEX0053365 @ mm10
Exon Skipping
Gene
ENSMUSG00000048728 | Zfp454
Description
zinc finger protein 454 [Source:MGI Symbol;Acc:MGI:2679253]
Coordinates
chr11:50872720-50886498:-
Coord C1 exon
chr11:50886369-50886498
Coord A exon
chr11:50878043-50878105
Coord C2 exon
chr11:50872720-50874287
Length
63 bp
Sequences
Splice sites
3' ss Seq
CATCACTTTCTCTTCCTCAGATG
3' ss Score
10.38
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GAGTGCAGATGCTTCTAGCCAGAGAACCCCAGCAATTGTAAAGCTCCTCCCCTGCCTCCTTCCTACTCAATGCTCCTCAGCTCACCAGAGAAAAGGAATGGCTGTCAGCCAGCTCCCGGCCCTGGTCCAG
Seq A exon
ATGCCGCAGATGAACCTCACTTGGGTCCTCGATCTGCGTGTGAAGCTCAGGTTCCGGTTACAG
Seq C2 exon
GGGAAATTACAGTGGCCATGAGTAAGAAATTCCTCAAGGCAGATATCCCTGAGAAAGAGTCGGATCAATGGATAGCAAAGGAAAGAGCATGTGCTAACTTGTTCAATTGGCAGTGCCAGGAAGGTCAGGAGGTGAAGTTGCAGCAAGTGGTCCTCACCCAGCAGAACACTCCATCAAAACTGAGTGAGCAGAGAGTCAGAGCAGAGAGCTCATCACCCATCCAAAGTCAGAGATCTCAAGCAAGCAAAACGGCTTTTGAATGCAGCGAATGCGGGAAAGCCTTCTCTAAGAGTTCCACCCTTAAGAAGCATCAGAAACTTCATACCGAAAAACTCAACCCAAGTCAGAAATCACCAATGAAAGAGAAGCGATACAAGTGCCGAGAATGTGGGAAAGCCTTCCACCAGAGTACACACCTCATCCATCACCAAAGAGTCCACACTGGCGAGAAACCATACCAGTGCAAGGACTGTGGCAAGGCCTTCTCAGTGAGCTCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048728_MULTIEX1-4/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.379 C2=0.202
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCCTCCTTCCTACTCAA
R:
TGATCCGACTCTTTCTCAGGGA
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types