MmuINT1035609 @ mm10
Intron Retention
Gene
ENSMUSG00000048728 | Zfp454
Description
zinc finger protein 454 [Source:MGI Symbol;Acc:MGI:2679253]
Coordinates
chr11:50883184-50883811:-
Coord C1 exon
chr11:50883685-50883811
Coord A exon
chr11:50883277-50883684
Coord C2 exon
chr11:50883184-50883276
Length
408 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
TTTTCTTGTTCCTTCACTAGCAG
3' ss Score
6.83
Exon sequences
Seq C1 exon
GACTTGGTGACCTTCAAGGATGTGGCCGTGCTTTTCACCCAGGAGGAGTGGGGTCAGCTGAGCTCTGCCCAGAGGGCCTTGTATCAGGATGTGATGCTAGAGAACTACAGTAACCTGGTCTCACTGG
Seq A exon
GTAAGCTGGGCTCAGCGTCACCTGTGGGGGACTTGCTGGGGTCCCTGAGGTAAGCTGGACAGCATGGAGCCCAGCATCACCTTTCCAGGACTTATTGGGGCCCCTGCACAACAGGTTAGATTGGAATTGGGCTTGCTTATGATCTTGCCTTCACTCCTAGTGTATGTCTAGTCCCTTGGTGTCCCCAGAGCTGTGTTGAAGTGTGGAGATGTGTCACAAGTGAAAGGGGTGTGGGAACAGGCTCTCTGTGTCAGGTCCCAAGACGTCTTGTCCCACCCTTTGCAAACACGCTATGCTACCTCTCTAATCCCCATTTCTAGAATATTCTGGGGACCAGCTCTTATCTTTACAATGACTTTTATCTCAGGATGAACAGATTACGTCATGGTTTTCTTGTTCCTTCACTAG
Seq C2 exon
CAGGTCTCTTAGGATCCCAACCAGATATGTTCTTTCCCCTGGAGGAAGTGGAAGAATGTGTGTCAGAGGAGGCTCCTGAGGGCTTTGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048728:ENSMUST00000050595:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACCTTCAAGGATGTGGC
R:
CAGAACAAAGCCCTCAGGAGC
Band lengths:
214-622
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types