RnoINT0009060 @ rn6
Intron Retention
Gene
ENSRNOG00000022971 | AC115666.1
Description
NA
Coordinates
chr10:36371559-36372436:-
Coord C1 exon
chr10:36372064-36372436
Coord A exon
chr10:36371652-36372063
Coord C2 exon
chr10:36371559-36371651
Length
412 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
TTTTCTTTCTCCTTCACAAGCAG
3' ss Score
4.42
Exon sequences
Seq C1 exon
GAGTGGGAGATGTGGACATGGTGAACAAGTGCGCAGTCCCACTACCTCTCTCCAGTTGTGCCAAAGTTGGAGACAAAGTTTGTCAGCAGCACAAAGCTCAGCCACTGGGAGATACTGCAGAAACGCCTAGCCCTGTCCTGAACACCAGCGTCCTGCAGACTGGCGACCCAGGAGAGGTGTGGAGGCAGCCAGTGTGAACTTGTCTGTGGTATCGCCTGGTTGATAAGGAAGGCTTCTCTGTTACAGGACTTGGTGACCTTCAAGGAGGTGGCCGTGCTCTTCACCCAGGAGGAGTGGGGGTGGCTGAGCTCTGCCCAGAGGGACTTGTATCAGGATGTGATGCTAGAGAACTACAGTAACCTGGTCTCGCTGG
Seq A exon
GTAAGCTGGACAGCACAGGGCTGAGCTGCACCTTCGGGGGTTTTGTTGGGGGTCTCTGAGACAAGCGGGACAGCACAGGGCTGTACTACGCCTTTGAGCGACTTGTGGTCCCTGAACAACAAATTGGGCTGGAATTTGGCTCGCTGATGGTGCTGCCTTCACTCCTAGTATATGTCTATCCCCTCGGTGTCCCCAGAGCTCTCTTGAAGTCTGGAGATGTGTGACAAGTGAGGGGTCTGGGAACACTCTCTGTGTCAGGTCCCAAGCCATCCTGTCCCACCCCTTGCAGACATGCTCCCCTTCCTCTCTAGTCCCATTTCTAGAATACTTTGGGGACCAGGTCTCATCTTCACAATGACTTTCATCTTGATGATGAACAGATAAGGGTATGGTTTTCTTTCTCCTTCACAAG
Seq C2 exon
CAGGTCTCTTGGAATCCCTACCAGACATGTTCTTTCCCCTGGAAGAAGTGGAAGAACGTGTGTCAGAGGAAGCTCCCAAGGGCTTTGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022971:ENSRNOT00000039827:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.219
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGATACTGCAGAAACGCC
R:
TTGGGAGCTTCCTCTGACACA
Band lengths:
346-758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]