MmuINT0179287 @ mm9
Intron Retention
Gene
ENSMUSG00000048728 | Zfp454
Description
zinc finger protein 454 [Source:MGI Symbol;Acc:MGI:2679253]
Coordinates
chr11:50696686-50697313:-
Coord C1 exon
chr11:50697187-50697313
Coord A exon
chr11:50696779-50697186
Coord C2 exon
chr11:50696686-50696778
Length
408 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
TTTTCTTGTTCCTTCACTAGCAG
3' ss Score
6.83
Exon sequences
Seq C1 exon
GACTTGGTGACCTTCAAGGATGTGGCCGTGCTTTTCACCCAGGAGGAGTGGGGTCAGCTGAGCTCTGCCCAGAGGGCCTTGTATCAGGATGTGATGCTAGAGAACTACAGTAACCTGGTCTCACTGG
Seq A exon
GTAAGCTGGGCTCAGCGTCACCTGTGGGGGACTTGCTGGGGTCCCTGAGGTAAGCTGGACAGCATGGAGCCCAGCATCACCTTTCCAGGACTTATTGGGGCCCCTGCACAACAGGTTAGATTGGAATTGGGCTTGCTTATGATCTTGCCTTCACTCCTAGTGTATGTCTAGTCCCTTGGTGTCCCCAGAGCTGTGTTGAAGTGTGGAGATGTGTCACAAGTGAAAGGGGTGTGGGAACAGGCTCTCTGTGTCAGGTCCCAAGACGTCTTGTCCCACCCTTTGCAAACACGCTATGCTACCTCTCTAATCCCCATTTCTAGAATATTCTGGGGACCAGCTCTTATCTTTACAATGACTTTTATCTCAGGATGAACAGATTACGTCATGGTTTTCTTGTTCCTTCACTAG
Seq C2 exon
CAGGTCTCTTAGGATCCCAACCAGATATGTTCTTTCCCCTGGAGGAAGTGGAAGAATGTGTGTCAGAGGAGGCTCCTGAGGGCTTTGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048728-Zfp454:NM_172794:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.094
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACCTTCAAGGATGTGGC
R:
CAGAACAAAGCCCTCAGGAGC
Band lengths:
214-622
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: