BtaINT0165541 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004262 | ZNF454
Description
zinc finger protein 454 [Source:HGNC Symbol;Acc:HGNC:21200]
Coordinates
chr7:2362335-2362952:-
Coord C1 exon
chr7:2362826-2362952
Coord A exon
chr7:2362431-2362825
Coord C2 exon
chr7:2362335-2362430
Length
395 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CCCTTTTTTTTTTCCCTCAAAAA
3' ss Score
3.04
Exon sequences
Seq C1 exon
GAATCAGTGACCTTCAAGGATGTGGCCGTGCTTTTCACCCAGGATGAGTGGGCGCAGCTGAGTCCGGCCCAGAGGGCCCTGTACAGGGATGTCATGCTCGAGAACTACAGCAACCTGGTGTCCCTGG
Seq A exon
GTAAGTGGGAGCCTCTGGAGGCTCATCTTCAAATGGGAGGTTTCTTGGGAATCCTTGAACTGGTTCCATACAGCAGCTTGGATTGGGAGTGAGCTGTTCTAAGGATGTTATGTCTGTGCCTCTCCTTTGTGTCCTGGGCACAGGGCTCTTTGGAGTCTAAGTGCAGATGTCTCAAAGGCGACTAGAAGTCAAATCCTCCCTCCCTCCTAGCAGGGAGAAGGACAGGAACAGATTGGCTTTGTCACCCCTGAACCTTCTTTTCCTCCTCCTGGGAACTCTCCTCTACCCTGGGCCCCTATCATGTCACCTTTTCCAGGAAGTTCCAGATCCCATTCTTGCAGTGATTTTATCTCTGGTATGAACAAATATGGCCCCCCCTTTTTTTTTTCCCTCAA
Seq C2 exon
AAACAGGACTCTTAGGACCCAAACCAGATATGTTTTCCCAGTTGGGAAAAGGGGAAGAGTGGATGCCAGAGGACTCCTTGGGAGGCTTCTGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004262:ENSBTAT00000016859:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAGTGACCTTCAAGGATGTGG
R:
CAAGACAGAAGCCTCCCAAGG
Band lengths:
222-617
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]