HsaEX0073737 @ hg19

Exon Skipping

Gene

ENSG00000178187 | ZNF454

Description

zinc finger protein 454 [Source:HGNC Symbol;Acc:21200]

Coordinates

chr5:178373360-178393434:+

Coord C1 exon

chr5:178373360-178373486

Coord A exon

chr5:178373898-178373987

Coord C2 exon

chr5:178391656-178393434

Length

90 bp

Sequences

Splice sites

3' ss Seq

TTGTCTCCCCTTAAAAACAGGAC

3' ss Score

7.91

5' ss Seq

TTGGTAAGA

5' ss Score

8.85

Exon sequences

Seq C1 exon

GAATCGGTGACCTTCAAGGATGTGGCTATACTGTTCACCCAGGAAGAGTGGGGGCAGCTGAGCCCCGCCCAGAGGGCCCTGTACAGGGACGTGATGCTGGAGAACTACAGCAACCTGGTCTCACTGG

Seq A exon

GACTCTTAGGACCCAAACCAGATACGTTTTCCCAGCTAGAAAAAAGGGAAGTGTGGATGCCAGAGGACACCCCTGGAGGCTTCTGTCTTG

Seq C2 exon

ACTGGATGACTATGCCTGCCAGTAAGAAATCTACTGTCAAGGCAGAGATTCCTGAAGAAGAATTGGATCAATGGACAATAAAGGAAAGATTCAGTAGCAGTAGTCACTGGAAGTGTGCTAGCCTGCTGGAGTGGCAATGTGGAGGCCAGGAGATCAGTTTGCAGCGAGTGGTACTCACTCACCCCAACACCCCATCACAGGAATGTGATGAATCCGGGAGCACTATGAGCTCATCTCTTCACAGTGATCAAAGTCAGGGATTTCAACCTAGCAAAAATGCCTTTGAGTGTAGTGAGTGTGGAAAAGTCTTCTCTAAGAGTTCAACTCTTAATAAACATCAGAAAATTCATAATGAAAAAAATGCAAATCAGAAAATTCATATTAAGGAGAAAAGATATGAATGTAGAGAATGTGGGAAAGCCTTTCACCAGAGTACGCACCTTATCCATCACCAAAGAATTCACACTGGCGAGAAACCCTATGAATGTAAGGAATGTGGC

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000178187-'4-7,'4-5,5-7

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.161 C2=0.178

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF0009621=zf-C2H2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9)

Main Inclusion Isoform:

ENSP00000326249