RnoALTA0001234-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000022971 | AC115666.1
Description
NA
Coordinates
chr10:36371559-36372436:-
Coord C1 exon
chr10:36372064-36372436
Coord A exon
NA
Coord C2 exon
chr10:36371559-36371648
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
TCTTTCTCCTTCACAAGCAGGTC
3' ss Score
7.59
Exon sequences
Seq C1 exon
GAGTGGGAGATGTGGACATGGTGAACAAGTGCGCAGTCCCACTACCTCTCTCCAGTTGTGCCAAAGTTGGAGACAAAGTTTGTCAGCAGCACAAAGCTCAGCCACTGGGAGATACTGCAGAAACGCCTAGCCCTGTCCTGAACACCAGCGTCCTGCAGACTGGCGACCCAGGAGAGGTGTGGAGGCAGCCAGTGTGAACTTGTCTGTGGTATCGCCTGGTTGATAAGGAAGGCTTCTCTGTTACAGGACTTGGTGACCTTCAAGGAGGTGGCCGTGCTCTTCACCCAGGAGGAGTGGGGGTGGCTGAGCTCTGCCCAGAGGGACTTGTATCAGGATGTGATGCTAGAGAACTACAGTAACCTGGTCTCGCTGG
Seq A exon
NA
Seq C2 exon
GTCTCTTGGAATCCCTACCAGACATGTTCTTTCCCCTGGAAGAAGTGGAAGAACGTGTGTCAGAGGAAGCTCCCAAGGGCTTTGTTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022971-2-4,2-3-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.219
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTAACCTGGTCTCGCTGG
R:
TTGGGAGCTTCCTCTGACACA
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]