BtaINT0165542 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004262 | ZNF454
Description
zinc finger protein 454 [Source:HGNC Symbol;Acc:HGNC:21200]
Coordinates
chr7:2361855-2362430:-
Coord C1 exon
chr7:2362335-2362430
Coord A exon
chr7:2361866-2362334
Coord C2 exon
chr7:2361855-2361865
Length
469 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
AGCATTGTACTATTCTCCACCTT
3' ss Score
-3.62
Exon sequences
Seq C1 exon
AAACAGGACTCTTAGGACCCAAACCAGATATGTTTTCCCAGTTGGGAAAAGGGGAAGAGTGGATGCCAGAGGACTCCTTGGGAGGCTTCTGTCTTG
Seq A exon
GTAAGCATCCTGCATGTGGGAGGCATTGGGAGCGACTCAGCATGTGCACCGGGCCTGTGGACTGAGAAACCAGCACCTTTCCCTTCACATTCACCTAAATGCTTTGTTGCCACATTTGTCCCCATGTGCGTTTGGCACTCCTTTCTTGTGGCAGTTTGTGCCTCTCCGGACCGTCCTTTCTGTGAGTTTTCTTCTTTCTCTGTTTGGCATAGATGGGCAGCTCTGTGCCACGCACTGTGCTTGTGTGTCCTGTTGTTCCCTGAGCACCTGAGCATGCAGTCTCTGCTCAGATTCCTCCAGTGAGGAGGGAGAGCACTGGGTTACACAGAGCTGTGCAGCTTCTGGTCCTCAGGGCCAGTCACTGTGCCCACTGAGGCAGCTCTTCCAGACAGACATGGCAGATTTCTTCCACCACCTCTATGTTTGTTCATCCACCTGTACCTACACCCAGCATTGTACTATTCTCCAC
Seq C2 exon
CTTCTGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004262:ENSBTAT00000016859:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]