MmuINT1035611 @ mm10
Intron Retention
Gene
ENSMUSG00000048728 | Zfp454
Description
zinc finger protein 454 [Source:MGI Symbol;Acc:MGI:2679253]
Coordinates
chr11:50872720-50878105:-
Coord C1 exon
chr11:50878043-50878105
Coord A exon
chr11:50874288-50878042
Coord C2 exon
chr11:50872720-50874287
Length
3755 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CTGTTTTCAATATCTTTCAGGGG
3' ss Score
10.9
Exon sequences
Seq C1 exon
ATGCCGCAGATGAACCTCACTTGGGTCCTCGATCTGCGTGTGAAGCTCAGGTTCCGGTTACAG
Seq A exon
GTGGGCAAAGAGTTGGTGAGAAGGGGGTGACAGACAGATGCAGACACAAGGAAGTGTGCTGAATCTGAATGTATTTTGTCTCAAAATGAGCATCAGTTTTTTATAATACAGAAAACAGAGGAGTAGGATATCACAGCAGGCAAGGTACATCGAAGTATCAGACACAAAACAGAGGAATGCCTACAAAGGACTGGCAGGAACCAACTGGGATAAAATTCAGTGTTAACAACTGGGATCAAAAGCAGCCCCACCTAAGGTCAGCTTAATCTTAGAAGTCAGCCCTTGCCATAGTTCCAATTCTAGTCTATTGTATAGTCCACCTTCCCCATAGGCCATTGTAAATTCCTGTGTATGGGTGTAACTCAGCCATCTATAGTTCTAAGTATCTACTCTGGTTCCTCCTTAGACCACAACCTTCCTTCCTCCTACATAATGGTAAATTCCTGCATATGGGAGTAAGTTGGCTATGATTCTAAGTGATAATAATCTTGTGTGGGGGTACTTTCTACTAATAAGTAATGTAGTCTGCCATACCTGACTGTAATGAAAATTCTAAGTATACTTTGCTAAGCTTGCCCTGAGATTTCTAACTCTATGTAGTAGATAGTAATGCCTGATTTCTTTCACTATCTCTCTTACAATACTAGAGGCAAATCTGAATGTCACTGGATAGGCAACATTCTTACTGAATTCAAAGCCCACGGTCAGCTCAAGGACTGCCTAGGACTGGGAGGAATCTAACTTAGCTATATGTCAAAATCAATCCTTAGAGGCAATTATAATAAAGCAATATTAAGAGGAAGCACACAGATCCATTTACCGACTAAAGCAAGGACAGATTTGGAGCACTCGTTACACAGGATGCCACGGTTCCAGGAGACTAAGTTTCCATGAACTTTTCACCTCGGGATCGCGTCCAGGCTTTTCAGTCTGTCACACGGGTCACTACTGGAGTGGGTGTAGCACTCAGATATTGGCTTTGAACATTTGGATGTTCATTCTCCCTCTACACATAGGTGGTATCTTTTGTTTATTTGTTTATTTAGTAGGCAGTTATCTACTTTCGTGTTGACTCTTTGGAGATGTTTTCTTTTTTTGGTTGATTTCCTCTTTTGAGTTTGGCAATTTGATTCTTTTAACACTTAGCATGTTATGCCATTGTCTTCTGGGCTCTGTGGTTTTCCTCAACAAGACTTTTTGCTGCCCTTATTGGCAATGGAACTGTACTGGCACTTTCCATATGTCATTTGGCTTTCAGTCATTCTTCTCTGATGTGCCTAGATGGACTTTAGATTTGACCATGTTCAGTTACAGTAAGGGTGTATCTCCCATGTTCATGATTTAAACCTTAAAATGTACCTGTTTGCTTTTCCCCATTATTTATTAGCATTGTATAGTCTACATAAAGATTTTTAAAGTATTTTATTGTATTTTTGTGTGCTTTCTTTGTAGGTGTATATTATTTAAAACCTACATTAATAACTGTACTTAAATGCTTAACCTCTGTTGGCATTCCTTCTAGGCGCCCCCCAACAGTTACCTGGTAAGAGCTAGGTAGGACAGGCTTGCTATAAAAGGGCTGTTTGCCTCTCCTCATTCTCTCTCCCCCTTCTCACTCTCTGACTCTCTTCTTTCCCTGAGCCCTTTCTCCCTCTCTCTCCCTTGCCCCCCTCCATGTGTTCCTGGCTGGCCCCTCCTCCTCCTCCTCTTCCTCCTCCTCTCCCCCTCCTTATTCTCTTCTTCCTCCTCCTCCTCCTCTTCTTCCTCTTCTTCCTCCTCTTCCTCTTCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTCTCCCCCTCCTTATTCTCTTCTTCCTCCTCCTCTTCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCTCTTCCTCTTCTTCCTCTTCTTCCTCCTCCTCTTCTTCCTCCTCCTGCTCCTCCTCTCCCCCTCCTTATCCTCTTCTTCCTCCTCCTCCTCCTCCTCTTCCTCCTCTTCCTCTCTCTCTCCCTCTCTCTCTCCCTCCCCCTCTCTTTCTCTCTCTCATTTTCTCTGTCTGTACTTCCTTCTCAACTCCCCTTTCTATGCCCTACATAATCTCTATTCTACACTATACCCATCTTATGACTGGCACCTCAGGGGGAAGGGATGCCTCAGCATGGGCCTGCCGAGGCAACCCACCCACCTCACCACACCACACTCTACAAAACATATCTTGGCTTTCTTTTTATAAAACATGACATCCTCCCTTTTAGTCCATCACCTATCAGAGATAGTAGAAAGGAAAGGTTAATAAGACAAAGAAGAATGAAAACCCATTTAGAAATAGCCCTTTGGAGTGAGTCAAATCTGCATTGTCAGGATATCAGCGGTTTAGTTCACACAAGTCAGCAGCAGTAGCTCAGTCCACTCACAAACATCATTCACGAATCAGCAACGGCAGTTTGATCCAGAAGAAAATGTGAGGCTCTGACAATGGGCCCAAGTCCAACGAAGTGGTAAGAAGCCACCAGAACATCACTAGATGTTCTTTGGTGCATAGTAGAGAGCTACTAAGTCATGAGAAACAATGATGAGCAAAGAGTGGCAAGGTGAAGCAATGGCACACAGCACCACCCACTGTCTGGATTGTATTCATACCCTTTCCAAGCACCACATCTTCTCTCAAGCGTCTGCTCTAGCAAAGCATCACATGCCCTTTTGCCAGAAAAGCAGCTTCCAGAAAAACACCACATGTCTGTTCTCAGCAGAACATCCTCTCACGTGGCTGCTTCAGCAAAAACATCCTCTCATAAGACAGATTCCAGAAAAAATCACATGGCACAACTGAGTCTCAAAACAAAAACAAAAACAAAATTTCCAATTCATTTTTTGATTAATTTTTTTTCATACAATATATTTTGATAATGGTTTTACCTTCTTCCCCTCAGATCCTCCCCATCTAGAGATAATTTTTGAGACAGAATCTTTCTTAAAAGATTTAATTATTTGTATGTGTGTGCACATACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCCTGTATGAGTGTGTACTTGTTTACCTATGTGTATGTCAATGTACCACATGCATACTTGGTGCATGCAAAGCCAGAAGTAGGCATTGAATGCCCTGGAACTTGAGTAATAGACAGATGTTAGCCACTGTGTGAGTGCTGGAAATTGAACCTCAATCTTGTAAAAGAGCAGCTAATGCTCTTAACCACTAAGCCAGCTCTTCGGCCCCCAAAACTTACTCTTTAACCCAGGTTAGCCTCAAACTCATGGTGGTCCTTCTGCCCCAGCCTTTCAGATGTTGGGATTACAAGCATGAGTCAGCTTTTGTGGTCTATATTGGATATTTTTGAGCTTTGAAAGTCAGATAAAATCTCTTTAGTCACAGACAAAGTAACTGGTCTCAGAATTCCAAGCCAGATCTTCTGAAATTGGGCTCCCAACACTTCTGCCTCCTCATAGCTTTAGCCTCTACCATCCTCCTGTGGTCGTTTCTCTGGCTATTTCCCTTCACATTACCACTTTAAGTCTCTAGCTACCATTTCTTTGTTAGCATTGCTAATGGCTGTTCATTTCATTTCGTCAAGCTATTTCACCAGAGTAAAAGTGACATTTCTGTTTTCAATATCTTTCAG
Seq C2 exon
GGGAAATTACAGTGGCCATGAGTAAGAAATTCCTCAAGGCAGATATCCCTGAGAAAGAGTCGGATCAATGGATAGCAAAGGAAAGAGCATGTGCTAACTTGTTCAATTGGCAGTGCCAGGAAGGTCAGGAGGTGAAGTTGCAGCAAGTGGTCCTCACCCAGCAGAACACTCCATCAAAACTGAGTGAGCAGAGAGTCAGAGCAGAGAGCTCATCACCCATCCAAAGTCAGAGATCTCAAGCAAGCAAAACGGCTTTTGAATGCAGCGAATGCGGGAAAGCCTTCTCTAAGAGTTCCACCCTTAAGAAGCATCAGAAACTTCATACCGAAAAACTCAACCCAAGTCAGAAATCACCAATGAAAGAGAAGCGATACAAGTGCCGAGAATGTGGGAAAGCCTTCCACCAGAGTACACACCTCATCCATCACCAAAGAGTCCACACTGGCGAGAAACCATACCAGTGCAAGGACTGTGGCAAGGCCTTCTCAGTGAGCTCTTCCCTTTCCTACCACCAGAAAATCCATACCGGAGAAAAGCCCTTTGAATGTAATGTTTGTGGAAAGGCCTTTATCCGGAACATACATCTTTCCCACCATCATAGAATGCACACTGGAGAGAAACCTTTCCAATGCAACCTTTGTGACAAAGCTTTCGTTTGCAGAGCACATCTTACCAAACACCAGCACATTCACAGTGGCAAGAAGCCCTATAAATGTAATGAGTGTGGGAAAGCCTTCAATCAGAGTACAAGTTTTCTGCAGCATCAGAGGATCCACACTGGAGAGAAACCCTTTGAATGCAACGAGTGTGGCAAGGCCTTCAGGGTGAACTCTTCCCTTACTGAACACCAGAGAATCCACACTGGGGAGAAACCATATCAATGTATCGAATGTGGCAAAGCTTTCAGGGATAACTCATCCTTTGCACGCCATCGGAAAATTCACACTGGAGAGAAACCTTACAGATGTGGCTTGTGTGAGAAGGCTTTCAGGGACCAGTCAGCCCTAGCACAGCATCAGAGAACTCACACTGGGGAAAAGCCTTACACGTGTAACATATGTGAGAAAGCCTTCAGTGACCATTCGGCCCTTACCCAACATAAGAGAATTCACACGAGAGAAAAACCGTACAAATGTAAAACCTGTGGGAAAGCTTTTATCCGAAGCACACACCTCATTCAACACCAGAGGATTCACACGGGAGAGAAACCTTACAAATGTAACACATGCGGGAAAGCCTTCAACCAGACTGCAAACCTCGCTCAGCACCAGAGGCATCACACTGGAGGAAAGTGATAGAAAGGCAGTTAATAGGTGCTGAGGGGATGATGTCATTAATTATTGAATAGAAGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGGAGCCAGGTTGCCTAATGCTAAGGGTCTTGAGAATCTTATGAATGGTGAACACACCTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAATTACTATTAGAACCAAAATGAAAATTCATTAAAAGCATAAATGTCAGTTTATCAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048728:ENSMUST00000050595:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.379 A=NA C2=0.202
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types