BtaINT0165545 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004262 | ZNF454
Description
zinc finger protein 454 [Source:HGNC Symbol;Acc:HGNC:21200]
Coordinates
chr7:2347258-2352734:-
Coord C1 exon
chr7:2352720-2352734
Coord A exon
chr7:2348592-2352719
Coord C2 exon
chr7:2347258-2348591
Length
4128 bp
Sequences
Splice sites
5' ss Seq
TTGCTATAT
5' ss Score
-6.52
3' ss Seq
TTATTTTTAATGTCTTTCAGACT
3' ss Score
9.8
Exon sequences
Seq C1 exon
TCTGTGTCCGTATTG
Seq A exon
CTATATCATTCTTGATAGTGGTAATATGTGCCTTCTTTCTTTCTCCATTAGTCTTGATAGAGGTCTTTTGATTTTTAATTAAGTTATTGAGTTCTGTTATTTTTGTTATTCCTTTCTCTTTTGTATTTAATATTCTATTTTTCTGATTTCTTGAGATTGATAATTGATATAGATAGATAGATAGATAGATATACATTTCTTTCTAACCATGCCGTAGCTGTATTTTGTTATGTTTCATATTTCTGTTACCATTTAGTTTACAATATTTTCAAGTTTTGTTGTGATTTCTTCTTTATCAGTTATTTTAAAATGTATGGACTAGTTTTAAAATATCTGTGGATTTTCTAACTACCTTTTTGGTATTTTGCTATTTATTTCTGGTGTAACTCCACTGAGTTCAGAGTACACATTCTGAATGATCTGTGTCCTGTGAAATGTGTTTATCCTACTTTGGTGGTGATGGTTTAATCACTTAAGTTGTGTCTGACTCCTGCAAGCCCATGGACTGTGACCCACTAGGTTCCTCTGTCCATGGGATTTCCCACGCGAGAATACTGGAGTGGATTGCCATTTCCTTCTCCATTTTGGTTAATGTTATGTATGGACTTAAATATATATATTCTGTCATTGTTGGGTATTCCGAATATTCAGTATATCATTTAGGTCAAGTTTATCTTATAGCTCAGATCACCCCTATTCTTAATGGTTTGATTATCGAGTTTTGGAGAATGGTGTGCAAACATCTATCATTGTTAAGATTTCTTTTTTCCTTTTATTGTCCCAATTTTTACTTTATACATTTTGAAGTTATGTTACATGAAAATATAGATTTGTTATATATTCCTAGATAATTGAACAAACCTTTAGTCAATGTGAACAATTTAAAAGTCTGTTTTCTCTAGTTAAATGAGATTTGTCTGATAGTAGTATAGGTACACCAGCTTACTTGTGGTTAGTGCTTGCTTGATACATCCTTTTCTATTCTTTCTTTTTATTTCTGGGTCTGTATCTCTGGTAATACTCTCATGAGTGGCTTATAGTTGGATTTTATTTTTTTAAATACAGTCTCATAACCTTAGTTTTTAATAGGATAATTTAGACCAGTTGCTAATATATATATATAGTATTGGCTGTCTGCTATTTTATTATTTATTTTCAATTTTACTCACTAGCTTTAAATCTCTTTTTTGTCTTCTATCTTGCCTTCTCTTGAATCAACTATTTTTATTGTTCTATATTCCCCCATAAGAGCTTGTATCTTCTTTAACTGTCTTTTATTTCTAAGTCTAGTAAATAAAACCAGGTTATTACTATCCAAAATAAGTAATTCCCAGGCAATGCTAATAACTTGAAACAATGCTATTTTTTTTTCATCTTTTGTGTTAACTTTTCTTATGTATTTTAATTATGTATATATGTTCAACCTCTCAAGACATTTCTAGTATTATTTTGTGCAATAATATTTTTAAAATGATTTTGTTTATTTATTTTTATTTTGACTGTGCTGGGTCTCCCTTGTTGCGTAGGCTTTTCTCTAGTTGCAGGGAGTGGGGGCTATTCTTTAGTTGTGGTGCATAGGCTCTTCTGGGCTTCCCTGGTGGCTCAGAAGGTAGAGAATCCACCTGCAATGAGGGAGACCTGGGTTCGATCCCTGGGTTGGGAAGATCCCCTGGAGGAGGGCATGGCAACTCACTCCAGTATTCTTGCCTGGAGAATCCCCATGGACAGAGGAGCCTGGCGGGCTGCAGTCCATGGGGTCACAAAGAGTCAGACACCACTGAGCGACTAAGCACAGCACACACTCCTCTCTTCTGTTATGTCCGATAATATACTGTTAAATCCATCTATTGGGTTCTTTATTTCATTTATTATATTCTTCAGTTCTAGAATTTTCACTTGATTCTTTGGTTCTAGTTCACTGTTGAAATTCTCACTCTTATCTGTTTTATTGAACATAGTATTCACACTTATTTTTAAACCCCATGTCTGATAACTTTGGTATCTGAGTTCTGAGGATCTTTGTCTAATATTTGCTTTTTATCTTGAATAATTTCATAGTACTCCTGGTACTTTAAGACTGAATCCTAGACATTATGTATGAAGGAGTGAATAGGCTCTGGATGATGTTATTTTCCCTCCAGAGAAAGCTTGCCTTCCCTCTGTTAGACAGCAGGAGTGAAAGCAAACCTTCCTAATCCATCAGGGACTCTTTAGCTGGAGATTGGGTTGAATGTTCAAGAAGCCCTTGCTACTGAGTTGTAGCCCTCCAGGAGTCCCAGCTGAGAGCTTTATATGTTTACTGTGACCACCACTCACCCCACCCCAAGAAGGTCCTGAACTCCAGTTTTTGGCTCAACGGTACTGTAAGACTATAGAGAATTCTGAATTTCTACTTAGCTTAGTTTCTTACCTTGAGAAACTTAAGAATTCATCAAATTCTGTGAGGAAAAAAACTGAATCACCTTTCTGCATTTCTATTCTCTCTCAAATGTTAGACTATCATTTTGGTCTCAAGTTATATCTGATGACTTTAGACAGATTCTTTTTTCTATGCAGATTTTTTCAGTTATTTTTTGCAATAATATTGGTCTGCCACAGGGCCACTCTATCAGGTCCAGAAGCAAAAGTCAGTTCTTAAGATTTTGAGATTTGGCAAAACAGGTGTTTAAACATTCTTTCTTTTGAGTGAAGATATGTTATTCTAAGCTCACAAGGATTTTAGCCTTGAAGTGCACCTGTTTAACTTTCTTTTCCAGATAAGTACAAGGAGATGATGATGATGATAATGATTATAGCTCTTAATAGATTTTCTGGAGGGAGTAGGAGAAAAAAGTGTTGAGGGAGGCTTGTTCTTGATAGGCTTTCCCAGGAATCTTTGCATCATCTATGTTAATATCAAGTGCTTATCACTGCATTTCTTGGTACAAAGTCTTAAATAGACAAAAGACAGATGTTCACAAATATGTACCAGAAACTAATGTGCATTCAGAATTCTGCTTGTTAATATCAGGCTACCATGAGACCAAGTGAGAATGTTGTTGAGTAAGTGTGGAGTTTGTTTGTGGGGAGAGGAATCATCTTACCAGACAACTCATGAGACCATGGCCCATATCCCAGTAGCAGAGTCCCATTTCTAATGACTAGTACAGTCCTTTCCCCAAATTCAGGGCCTTGCCTCCAAGACATACTGGATGTATCCTGGCAGATTTTCTGCTTTGTTCCTAATTTTCTGTGCTCACATATATATCATCATGGTACATTTTCCTCATATCAATGTCACATTCATATAGGTCTGAAGACATTGCTTCCTTACCAGTAGCGTGCATGTGTGTGAAGTCACTTCAATTCGTGTCCGACTCTTTGCAACCCTATGGACTGCAGCCCACCAGGCTTCTCTGTCCATGGGATTCCCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTCCTCCAGGGAGTCTTCCCAACCCAGGGACTGAACCAGTGTCACTTCTATCTCCTGCACTGGCAGGCCGGTTCTTTACCACTAGTGCCACCGGGGAAGCCCTTACCACGGCAGAAAGTCCTAACTTGATTAGTAGATATCAGTGTTTCACAGCCTGACTTTCTGTTTTCCATCTGAATGCTGAAATGAGTTCACAAAACATAAATGCTGGTTTTAGTAGTTACTCTGAAAGCTGAACTTTTTTTCTACCAGATGTTGACCTCTAGTTGCAGTGGTTTCTTAAGGCCACATCTAGGTTATTTTAAAGCCCATATCACTAAAATAGATAAGATGCATGTTTTTTTTTTTTTCCCTTATCTGTTAGCATATTGCAGTCTCTATAGGTTTTTCGAGACTTTAAAATTCAGGTAACTTCTCTGTAATCACAAAGAAAATAAATATTTTACTCAGGCCTATGATTTCTGAATGCCATCTCCAAATTTTCCTGCTTCATACATAGTATATTTGATCAACCCGGTCCTGCCATGTCTTCTATCCACCTCTTCTCCCCTTTTTCTATATTCATTTCAAGAAGTCTTCAAAATTGCAACTTCTTTGTTAGCATTATAAACAAGGTCATGTTCTTATCCCAGCTAGATGTTTTACTATGATAAAACAGACATGTTTATTTTTAATGTCTTTCAG
Seq C2 exon
ACTGGGTGATTACACCTATGAATAAGAAATCTATTCTCAAGGCAGATATTCCTGAAGGAGAATTGGGTCAGTGGATGATAAAGGAAAGATTCACTAGAGATAGTTGCTGGAAATATGATGACCTGTTGGAATGGCAGCATGGAGGCCAGGAGATAAACTTGGAGCAAGTGGTGCTTGCTCATGAGAAAACTTCGTCTGTGGTTGGCGACCAGAAATGTGATGAATCTGGGAAACCCGGCACCATGAACTCATCTTTTGTTCAAAGTCAGGGATTTCAATCTAGCAAAAAAGCCTTTGAGTGTAGTGAGTGTGGAAAAGTCTTCACTAAGAGTTCAACCCTCAATAAACATCAGAAGATTCATAGTGAAAAACTTAATGCAAATCAGAAAATTGTTATTAAAGAGAAGCGATATGAATGTAGAGAATGTGGGAAGGCCTTTCACCAGAGCACACACCTCATCCATCACCAAAGAATTCACACTGGTGAGAAGCCATATGAATGTAAAGAATGTGGCAAGGCCTTCTCAGTGAGCTCCTCACTTACTTATCATCAGAAAATTCATACTGGAGAGAAACCTTTTGAATGCAACTTATGTGGAAAAGCTTTTATCCGAAACATACACCTTGCCCACCATCACAGAATACATACTGGAGAGAAACCTTTTAAATGTAATATATGTGACAAAGCCTTTGTGTGTAGGGCACATCTTACCAAACACCAGAATATTCATAGTGGAGAGAAACCCTATAAATGTAATGAATGTGGCAAAGCCTTCAATCAGAGTACAAGTTTTCTTCAGCATCAGAGAATTCACACTGGAGAGAAGCCTTTTGAATGTAATGAATGTGGAAAGGCCTTCAGGGTGAACTCTTCCCTTACTGAACATCAAAGGATTCATACCGGGGAGAAACCTTATAAATGTAATGAATGTGGGAAAGCGTTCAGGGATAATTCATCCTTTGCTCGACATCGGAAAATCCATACTGGGGAGAAACCTTACAGATGTGGTTTGTGTGAGAAAGCCTTCAGGGACCAATCAGCCCTAGCCCAACATCAGAGAATTCATACTGGGGAGAAGCCTTACACATGTAATATATGTGAGAAAGCCTTCAGCGACCATTCAGCCCTCACTCAGCATAAGAGAATTCATACTAGAGAAAAACCTTACAAATGTAAAATCTGTGGGAAAGCCTTTATCCGAAGTACACACCTGACTCAACATCAGAGGATTCACACAGGAGAGAAACCTTATAAATGTAATAAATGTGGGAAAGCTTTTAACCAGACTGCAAACCTCATTCAGCATCAGAGACATCATATAGGAGAAAAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004262:ENSBTAT00000016859:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.106
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]