RnoINT0009061 @ rn6
Intron Retention
Gene
ENSRNOG00000022971 | AC115666.1
Description
NA
Coordinates
chr10:36361312-36371651:-
Coord C1 exon
chr10:36371559-36371651
Coord A exon
chr10:36365091-36371558
Coord C2 exon
chr10:36361312-36365090
Length
6468 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CTGTTTTTGATATCTTTCAGGAG
3' ss Score
10.79
Exon sequences
Seq C1 exon
CAGGTCTCTTGGAATCCCTACCAGACATGTTCTTTCCCCTGGAAGAAGTGGAAGAACGTGTGTCAGAGGAAGCTCCCAAGGGCTTTGTTCTGG
Seq A exon
GTAAGGGCCATGCATGTGGGAGACACTGGGATGAGCCCAGTTGGAGGGGACAGTTGCATGTGTCTCAGCAAACGTGACATGCCTGGGCCACGTTGTCCCAGCTTGCATATGCAAACTAACATCATGTATGGAAGTCTGTACATGTCTGAGGACTTCCTTCTCTCCTCCTTTCACAGAAATTAGTGGTCTGTGGCTGGAGAGGTGGCTCAGCTGTTAAGAGCGCTCACTCTCTTCTGTGCCTGGCTCCCACATTCGGCCGCTCACAGATGTCTGTGACTCCATCTCCAGGGCATCCAGCATCCTCATCTGGCTTCCACAGGCACACTGCACACATGCTCATATACATATATCAAAACGAATCTTTAAGAATTCCCAGTCTAAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCGACGGCTCTCCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGACACCCTCTTCTGGTGTGTCTGAAGGGGATGACAGTGTACTCCCATACATAAAATAAATAAATAAATCTTACAAAATACCCCACCACCACCAAATTATCAGTCTGCTTGCCCCATTCCTGTGTTGGAGTGGCCTATTCTAAATCCAGCATGCAGGGCCTGCCTGCACTTCTCTGTTGAGGGACCTCCCTGGCACTCTGGAGACAGTTCTGTGCTTGCAAACACACATGTTCTCCCCATTCTTGTTCTTTAACCACATGGAGGCATGTTCACCCAGAGTTTAGCTCTCCATGTTTGTTACAGGTTCCAGAAGGGCCAGAATTGTCGTATACTTTGCGGTAGTGCTCACACTTAGAACAACGTGTGCCTTCTAGTGAGACCGGCTGCTGGAATGGGGAGAACATGACAGCTCAGGGGCTGTTGCTTGTCCTGTGGAGTCCCCTGGGGCTTCTGACTCAAGGACCAGGATATGTCTTCCTGCTACTTTGAAGTATTCTAGAAAGCTCCCTTGTTTTACTTAAAATCCTGTAACAGTGCACTTTCCTATAATGTGTTACAGGCTATAAAACATCTTTTTTTTTCTTGAGACAGAGTCTACACAGCCCCGGCTGTCCTGAAACATCCTGTTATAGTCAAGGCTAACTTGGAGAATCCCCTGCCTCTGCCTCCCAAGTGCTGGGATCAAAGGCCTATGCCACCATACTTGACCTGTACAGTATCTGTTAAGACCTTTTACTATTTTTTTCACTGTAATATAGTGAAAATAGGCAAAGGTTTATATTTTATAGTTAATATCATCTACCCACCTCAACTGTCTAGAACTCAAGGGTTGATGGAATTTAACTGTCATAACTCAGAATTGCAGTAATTTGCAGAAGTGTGTGTCCTGTGTTTCCTCAGTATAGGGAAATAAAGAAAGTCTTTAACTCACCCCTATAGAATATTATGTGGATCTGATCTTCTTTGACAACCAAATGCCTTAACTCATTGAGCCATCTTACCAACCCGAAATCTCCAATGTTTTAAGTACTGACAAACCACCTTATCTGACTTCAAATGACCGGTCACAATTAAACTTCAGACACGACCCTCTCCTATATAAGTCCCTCGAGTTATATATATAGGATATACATAAACATAAGGGGGTCTCACATTTAATCTTGGGTCCCAACCCAAACACTTGCCATTATGTAAGTGTAGATATCACAAAATGAAAAGGCGAGGGGGACACTGTTTCCAGGCGTTTCTGTCGTTAGATTAACACTTTCCCATCGCTTCGCCTCTTCCTCTTGGCTTAGCACAGACCGTTAGTTTGATTTAGCACGCACAGCATTAGGTTTCATTATCATGTTTTCAAACAAGATTTGCTTTGTTGATTCTCATGCTCTTCTCCTCCACTCCTCCGATTCCCCCATCCCCACTTACTTCCACTTTTATATTGAATATGCCCTCTTGCCCTCTTCTTCTTGGCCATTCCTTTGCCCTCTGTGGTCTCCCTTCTTGCTTATTCATAACCTGTACTCGCACTCATACAGCACATAGAAACGTGACAAGCTAGGATGTAATGGGCGAGAACATGTAACTTGGTTTGATTGGTTAGTTGGGTTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTTCTAGAACTCTGTAGACCAGGCTGGCCTTGAACTCAGATTGGCCTGCCTCTGCCTCCTGAGTGCTGGAATTTTTTTTTTCTTCTTTCTTTTTCTTCTTTTTTTCGGATCTGGGGACCGAACCCAGGGCCTTGCGTTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTGAGTGCTGGAATTTAAGGCTTGCACCACCACTGGCCTATAATATTTTCTGAGCCTGGGTTACCTCCAATAATATAATTCTTTCATTCTTCTTCCTGAATCAAAAGTTATTTAATATCCTGAGCATGGAGATTCTACCCCACCATTAGTTATTGAGTTCCCGGATGAAAGACACACACACCACCTTTATACTAACAATGAGCCTTAAGCAGCACGGTAGCTGGGCAGCTGCCTACCCTCCATGCTGTTAGAACTTACTCTCCTATCGATAACCCTGAGTTATTACTTACTGTTTACTATGCTCCATCCAGGCTGCTCTTAGCTGGAATCGACCAGTTCACATGAGCACGGTTTGATGGCCCAGCTAACCCATGGCGGCTTCTCCTTCTTCCTTTCCTGCACTCTCTTCTTCTTTGTGGTCCCAAGCCCAGGAAACCTAAACCCACCTGTGCCTCTCCTGCCCTGCTGCTGGCATCTTTATTTACCAATCACAGTTAACTAGGGGCGGGGTCATTCAGTGTCTTACTCTCTTTGGGGCAACCAGTCTTGGGGGACCCCAAATGATCATTAGAGTACAGCAGCACTAGGCCAACCCACTCCACCTTCCATTTTCCTGAAATTCACATGGTTTTATACAATTCACGATGTGTATTTTCCACGTTTTCTTTGTCATCGCCTGTTGATGGTCACCTAAGATGGTTCCATTTTCTTACTATGACAAATTAAGCACCAGTAAACATGAATGGGCTATGGTGGGACGCAGAGTGCTTGAAGATCTGCTCAGGCACGAGACTGTTGTGTCATAGGGTAATTCTATTTTTAATTTCCTTTTTTTTTAAAAGAAATCTTTACTGATTTCCATATGGCTATACTCCTACCAGCTGCAAATAAGGCTTTCTTTGCCCAAATCCTTGCCAGCACTCATTTTTGTGTTTTTACTCACAGAAAGAAAAACATCATGATAGATGGCTTTGCCTTTTACATTTTCTGTCCTCTGGGCCATGAGCTGACAGAGAGAGCTGATGGTTAAGTGACACATGGGGTGGTCTGTGCTAGATATTTATGCTTGCTGACACATTTAATCCATAATGTTCTGCAAAGCAGGAATGATGGATGCATTTTGCAGCCATCCTACCCAGCAAAGACAAGGAATTTGCACTGATGCTGCTCTTGGATGGAAGGCTGGAATTAGCACAGACCCAACTGAGCCCAAAGCTGTTGCGTTTCCCACATTACTTTTAATCAGGCAGAATCCGCAGGATAACTACCAGACCTCGTGTCTCAGGTCGCTGATGGTCACTTTTACCCTCTCTTCTTCGTTTACGAATCTGTTAGCTGTCTGCGTCTTACACCCTTTAGTTTCCCATTCTCCTTTTTGATCTGTTAACGTATTTGCGTGTAACAGCACAGTTTCATTTATAATTTTATTCTTACTTTACTTCGTGTGTGTATGCAGGTGCACACGTATACAGAGGACGGAGGATGTCTTACTGCCTTGGGGCAGGCTTCCTCTCTGGACCCGGCTGGGGCTTGGTGTATTTCAGCTGAGCAAACCCCCGTGATTTCCCCGCCTCTATCACCCTCCTCCTCAGTGCTGGAGTCTTGGCAGGAGGCTTGTGGCCACACTCAGCCTTTACCGGGAGCTAGGGTTCTCAACTCAGGTTCTTACACACCTACGGCGAGCACTCTTCCGTACTGAGCCACCGTGTCTATCCCCGTTTATCGTTTTAATTATGAGTTATAGCCTCTTATTCTCCCTCTTTGTCGTTATTTTTTTCTCTTAAATCTACTGTTGAGTACGTGTGGAACTGTAGTTTGCAGCAAGGGATTATCTGGTCAGATGATCCATGGGGCTGTACCTACTTTTCAGGTAAAGATCCCATCTGTAAAGGCCCTATGCTCCTTCCCCCAGATTCACAGACTTCCCTTGCTAGAAACCCTAGATGCTGTCTAGCAAGAGAACATTGTTTCTCTCCTTACTTTTGTGATGCTGTAGTGTTTTCCTCTTGTAGATGTCACAATGTCTTGTTTGGGGACGTCGCTTCTGCATACACAGTTGAACATCCTTACTACATAACATTTATGTATACATACGTGAACATTTCCACACAGCCTAGGGGGCAAGTTAACTTCTGTTTAACTGAATATTCGAATAAGTCTAGGAAACATAAAATAACATTGGTCTTGGTCTTGAGGGTTTCTTCCTACCAAGTATTGACCTCTAGATTCAGAGTTGTTTGGGCAACGCTGGAGTTGTCATGAAGACCACGTCACTGGACAAGATAGCCACACACACCTGTTATTTGTTAGCATGGTATGGCCCACATCAGAGAGTTTTAAAGTATTCTTGTGTATTTTTGTGTGCTTTATTTGTAGGTTTATATTTTTTAAAAACTACTTTAATAACTGTACTTAAATGCTGAACCTCTGTGGGCTTGCCTTCTAGGCTCCACCCAACAGTTTCCTGGCAAGAGCCAGGTAGGCCTGACTTGCTATAAAAGGGGCTGCTTGGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTTTCTCTCTCTCTCTCTCCCTCCCTCCCTCCCTCCTTTCCCCCTGCCCCCTCTCCACTCTCCACGTGTTCCTGGCTGGCCTCTCTGTTTCTTTGTTGCTACTCCCTTCTCAACTCCTCTTCCTATGCCCTAAATAAACTCTGTTCTACACTATACCTGTTCTATGGCTGGTACCTCAAGGGAAGGGATGCCTCACCATGGGCCTACTGAGGCACCCCTCCCACCTCACCATACTGAGCTCTACAAAACATATCCTGGCTTTTTTTTTTTTAATAAAATACGCCCTTCCTTTTAGTCCATCACCCATCAGAGGTAATAGAAAGGAAAGCTTATAATAAATAGTCCTTTGGGGTGAATTGAATCTACATTGTCAGGATATCAGCAGTTTAGTTCACATGAGTCAGTGGCAGTAGCTCAATCCACTCACAAACACCTTAAGTCAGCAAAGGCACTGTGATCCGGAAGAAACAGTCAATCGGCCCAAATCCAAGGAAGTGGTAAGAGGCCACCAGAACATCACCAGAAGTTCTTCAGTGCATTTCTCTCTATGAAGGCATGACAAACAATGATCATCAAAGAGTGGCAAGGCGAACCAATACCTCATAGCTTTGTCCACTGACTGCTGGGTTCTACTTAAACCCTTTCCAACATCATGTGTTCTCTCAAGCATCCACTCTGGCAGAACATCGCATGCCCTTTCACCAGGCAGCTTCCAGAAAAACACCGCATGTCTGTTGTCAGCAAAACATCCTTTCACATGGCTGCTTCAGCAAAAACATCCTCTCGTACGACAGTTACCAGAAAAACATCACATGACACAACTGAGTCTCAAAAAACTCCCCCCAGATTTCCACTTTATTCTTTGACTAAATTTTTTCATACAATATATTTTGATCACGGTTTTTCCTTCTTCCCCCTAGAACCTCCCCATCTAGAGATATCTCTCCCTCTAGAGAATTTTTCGAGACAGGGTCACTTTTTAAAATATTTTATTGTTTGTGTATGTGTGCACCTGTGTGTGCCTGTGCATGTGTGTGCATGTTTATCTATGTTATGTCTATGTACCACATGCATACTTGGTGCACGCAAAGCCAGAAGAGGGCATTGAATGCCCTGGAACTGGAGTCATAGATGTCAGACACTGTGTGGATGCTGGAAATTGATCCTTAGTCCTGTAGAGGAGCAGCCAATGCTCTTAACCAGTAAGCCGTCTCTCCAGCCCCCAAAACTTACTCTTTAACCTAGATTAGCCTCAAACTCATGGTCAGCCTCTCAAATGTTGGAATTACAAGCAGGAGTCAGCTTTTGTGGCCTATATTGGATATTTTTGAGCTTTAAAAAATCTATTTAGTCACAAACAAAATAACTGTTCTCAGAATTGCAGCCCAGATGCTCTGAAATAGGGCTCCCAACAGTGCCTCATGTGCATTGGCCTCTACGGTCCTCCTGAGTCATTTCTCTGGCTATTTCCCTTTGCATATTACCACTTTGCATCTCCAGCTACCGTTTCTTTGTTAGCATTGTTAATGGCTGTTCATTTCATTCTATCAAGCCATTTCACCCAAGTAAAAGTGACATTTCTGTTTTTGATATCTTTCAG
Seq C2 exon
GAGGGATGACTATGGCCGTGAGTAAGAAATTCCTTCAGGCAGATATCCCTGAGAAAGGATCAGATCAATGGATTACGGAGCAGAGAGCCACCAGAGAGACTCACTGGGTGTGTGCTGAGGAAGGTCAGGAGGTCAAGCCGAAGCAAGCAGTCCTCACCCATCAGGACACTCCATCAAAGCTGAGTGAGCAGAAAGTTGGGGAGTCTGACAAGGGCTGCACAGCGAGCTCCTCACCCATTCGAAGTCAGAGATCTCAAGCAAGCCAAAGAGCTTTCGAATGCAACAGATGCGGAAAAGTCTTTTCTAAGGGTTCCATCCTTAAGAAACATCAGAAACTTCATATTGAAAAACTCAACCCAAGTCAGAAAACACTGGTGAAAGAAAAACGGTATGAATGCAGAGAATGTGGGAAAACCTTCCACCAGAGTACACACCTCATCCATCACCAAAGAGTTCACACTGGTGAGAAACCGTATGAGTGTAAGGACTGCGGCAAGGCCTTCTCAGTGAGCTCTTCGCTTACCTACCACCAGAAAATCCACACCGGAGAAAAGCCTTTCGAATGTAATATTTGTGGAAAGGCCTTTATCCGGAACATACATCTCTCCCACCATCATAGAATACATACCGGAGAGAAACCTTTCCAGTGCAACGTTTGTGACAAAGCTTTTGTTTGCAGAGCACATCTTACCAAACACCAGAACATCCACAGTGGCAAGAAGCCCTATAAATGTAGTGAGTGTGGGAAAGCCTTCGGTCAGAGTACAAGTTTCCTGCAGCATCAGAGGATCCACACTGGAGAGAAGCCCTTTGAATGCAATGAGTGTGGCAAGGCCTTCAGGGTGAACTCTTCCCTTACTGAGCACCAGAGAATCCACACTGGGGAGAAACCGTATCAATGTATTGAATGTGGCAAAGCATTCAGGGATAATTCATCCTTTGCTCGACATCGGAAAATGCACACCGGAGAGAAGCCTTACAGATGTGGTTTGTGTGAGAAAGCTTTCAGGGACCAGTCAGCCCTAGCACAGCACCAGAGAACTCATACCGGGGAAAAGCCTTACACGTGTAACATATGTGAGAAAGCCTTCAGTGACCATTCAGCCCTTACCCAACATAAGAGAGTTCACACGAGAGAAAAACCGTACAAATGTAAAACCTGTGGGAAAGCTTTTTTCCGAAGCACACACCTCACTCAACACCAGAGGATTCACACGGGGGAGAAACCTTACAAATGTAACATGTGCGGGAAAGCCTTCAACCAGACTGCAAACCTCATTCAGCATCAGAGGCATCACATTGGAGAATGGTGATAGGAAGGCAGTTCATAAGTGCTGTGGGAATGATGTCATTAGTTATTGAATAGAAGAGAGGCCACAATCACAATGGAGTCTTTTATCAGGATGGTTGTATTTACTGGCAGTCGGTTTCATAATGCCTCGGGTCTTGAGAATCTTAGTGGTGAACGCACCTTGCTCTTCAGTCTGCCTCGTTTAGATAGCAGTGCCTTTTTATTGCCCTGAATTACTGACTATTAGAACCAACATGAAACTTCATTAAAAGCATAAATGTCAGCTTGTCAAATTCGCAACTGGTTAAGATAACTACAGGGGCTGGGGATGTAGCTCAGTAGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGAAAAAAAAAAAAAAGATAACTACAAAATTATGAAACTTAAGATTGAGAAGCAAAGGAACAAAATACTAAAGGGAATGGTCTATACGCATCTTCTCACGTGAGCAAGTAGCCTGCTGGCTTTAATAGAACCCTTTGTCTCCCCTCATCCATATCCCTGATGCCTGGTATACAGCAGGTGCCATCAGTAAGTCAAGCACCAGCCAAGAATCAGTGACTTTGTGCCTCTCAGGCTCCTGCTTGTTTCAGCTACCCTCTGTCAAATCTCCTGGGTCTGCCTGCCCACTTTCTTCTTAGGAAGTTCTAGGAAGGTTCATTTGAATTGCGTGACCATCTTCTGACTTAGTTTCAACTTTTACCACCATTTTCCTTGTTATCACCACCCTGGACCTCATTCATAGTGCAAATCAGAAGTGCAAAATCAGCAGGATCCATGAGTCTAGATTTTGTACCCAAATCCAGCTTTCAGAACTCAAGGTCTCTTTCTGGAGGCAAAAGTCATCAAAGGTACTGTGCCACCCAGTTGTACCTACCTCGGCTAACTATGATCCTGGTATGATTCCTAGGTAAGGGCTTTCCATGATAGCCATTACCCTCTCGCCAGTCCAAACCATAGTAAAGTCACAGTGTCCACAGGAGTAAGAGGCCTGCTCAATTTCAAGCGGGATGTGGTTGTGGCTCCTATCCACTTCCACTTTTGTGACTCGCCATCTCCTCCATATACAGTTGACCTGAGATGAGGGATCTAAGCCCAGTTCTCAGATGCTCTGACCCATTTCCTGTTCCTGGTCAGTGCTCTGTGGCTACTGCCTTAGAGTGTATCTGCCACTCCCGTATTATTGAACTGTGTGTCCGGGTCTTCACCTAGCTTTTCATTGGATTTCTGAAGGTTTTAATTCTGTGTTCTATAAAAAGCACTATGCTAATAATTTCTGCCTATATATTTGAAAGTTCCTTTCTTTTCGTCCATGGGGCATCCTACCACTTAAAGTCTCTACTGTTCTGACAGGGGTGAACAACATATCGAACAGTTCCATAGGTCCCGAGATGAAGGAGGGTACCGTTGACATTCTCTGACTATGGCCAGACCCAGGCCCAAAAGACTGTGACAAGCTAGACCTGCAGGCAGGTCTTCTGTCATTGATCCCTCAATACCTTTTGTAGAAATCACATTCACAACCAGGCATCTTCATGTATGCAGTCCCTGTAGACGCTCTCTTCTACACCACAAGGAACAGAAGGAGTCCGTACCAGTGCGAGGCGGTACGTGTTTCACAGTGAGAATGGAAGAACCAATAAAATCATTCCAGGAGGCTGGTTCCTGGTTCCTGGTTTGTAGAAGTACCGTTAATGAAATCAGATGCTCTTGTCCCCTGAAGTTAAAGAAAAGGACATTCTGTATTGTGTCACACTCTGTTGGCCCACACCTGGAAGTTTTGGGCACCTTCAAAGCCTAAATTGAGTTTTCAGCAAACAAAGCCCACCTGTGCAGGCAAGCCTCCCCTGTTAAGGGACTGAAAACTCACGTCTTCACTCACGCATGTAAAGGGTATTTCAAGAGGTTACCTGGCACTTCCGGGGTGGTGTACTCACATCCATTGCAGTCTCACCTGGCTAGACCTGCAGAGTGCATTAACCTGCCGCGACCTGCTTCCTGTTACTGACGTCTCTTTTCTGTACTATCCATACGACCTACCCTGTCCTTTCTCAGATAAACCCTTCTTGGTCTTTACCTTTGGTCTCTCGAGAGTTTCCAAGTTCCTTTTTGTTTTCTATTGGTTTGTTTTGAGACAAGCTGATCGTCGTGCCTCGGCCTCCCAAGTGTCCAGCTTGAAAGTCATCACATCCCTAAGTTCATCTTTCTGTTAATGGCAAAGGTGCCACCTCCAGATGGCAGGTACTCCACTGGGGCTGAAGCCTGCGTCAGGGTGACAGTCTCCTTATCTTAGTGACAGCCTAGGAGGGGGACTGCAGTCTCCCTTTCTCTGGGCTTATCTTCCTCAGCCGTAGCTCGTGAAATTATATTCATTCGCTCATCTCTTTCTCAAGACTAATAGAACCCCCTTACAAGATTCACAAATCTGAAGAGAAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022971:ENSRNOT00000039827:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=NA C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.2),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]