Special

MmuINT0179289 @ mm9

Intron Retention

Gene
ENSMUSG00000048728 | Zfp454
Description
zinc finger protein 454 [Source:MGI Symbol;Acc:MGI:2679253]
Coordinates
chr11:50686225-50691607:-
Coord C1 exon
chr11:50691545-50691607
Coord A exon
chr11:50687790-50691544
Coord C2 exon
chr11:50686225-50687789
Length
3755 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
CTGTTTTCAATATCTTTCAGGGG
3' ss Score
10.9
Exon sequences
Seq C1 exon
ATGCCGCAGATGAACCTCACTTGGGTCCTCGATCTGCGTGTGAAGCTCAGGTTCCGGTTACAG
Seq A exon
GTGGGCAAAGAGTTGGTGAGAAGGGGGTGACAGACAGATGCAGACACAAGGAAGTGTGCTGAATCTGAATGTATTTTGTCTCAAAATGAGCATCAGTTTTTTATAATACAGAAAACAGAGGAGTAGGATATCACAGCAGGCAAGGTACATCGAAGTATCAGACACAAAACAGAGGAATGCCTACAAAGGACTGGCAGGAACCAACTGGGATAAAATTCAGTGTTAACAACTGGGATCAAAAGCAGCCCCACCTAAGGTCAGCTTAATCTTAGAAGTCAGCCCTTGCCATAGTTCCAATTCTAGTCTATTGTATAGTCCACCTTCCCCATAGGCCATTGTAAATTCCTGTGTATGGGTGTAACTCAGCCATCTATAGTTCTAAGTATCTACTCTGGTTCCTCCTTAGACCACAACCTTCCTTCCTCCTACATAATGGTAAATTCCTGCATATGGGAGTAAGTTGGCTATGATTCTAAGTGATAATAATCTTGTGTGGGGGTACTTTCTACTAATAAGTAATGTAGTCTGCCATACCTGACTGTAATGAAAATTCTAAGTATACTTTGCTAAGCTTGCCCTGAGATTTCTAACTCTATGTAGTAGATAGTAATGCCTGATTTCTTTCACTATCTCTCTTACAATACTAGAGGCAAATCTGAATGTCACTGGATAGGCAACATTCTTACTGAATTCAAAGCCCACGGTCAGCTCAAGGACTGCCTAGGACTGGGAGGAATCTAACTTAGCTATATGTCAAAATCAATCCTTAGAGGCAATTATAATAAAGCAATATTAAGAGGAAGCACACAGATCCATTTACCGACTAAAGCAAGGACAGATTTGGAGCACTCGTTACACAGGATGCCACGGTTCCAGGAGACTAAGTTTCCATGAACTTTTCACCTCGGGATCGCGTCCAGGCTTTTCAGTCTGTCACACGGGTCACTACTGGAGTGGGTGTAGCACTCAGATATTGGCTTTGAACATTTGGATGTTCATTCTCCCTCTACACATAGGTGGTATCTTTTGTTTATTTGTTTATTTAGTAGGCAGTTATCTACTTTCGTGTTGACTCTTTGGAGATGTTTTCTTTTTTTGGTTGATTTCCTCTTTTGAGTTTGGCAATTTGATTCTTTTAACACTTAGCATGTTATGCCATTGTCTTCTGGGCTCTGTGGTTTTCCTCAACAAGACTTTTTGCTGCCCTTATTGGCAATGGAACTGTACTGGCACTTTCCATATGTCATTTGGCTTTCAGTCATTCTTCTCTGATGTGCCTAGATGGACTTTAGATTTGACCATGTTCAGTTACAGTAAGGGTGTATCTCCCATGTTCATGATTTAAACCTTAAAATGTACCTGTTTGCTTTTCCCCATTATTTATTAGCATTGTATAGTCTACATAAAGATTTTTAAAGTATTTTATTGTATTTTTGTGTGCTTTCTTTGTAGGTGTATATTATTTAAAACCTACATTAATAACTGTACTTAAATGCTTAACCTCTGTTGGCATTCCTTCTAGGCGCCCCCCAACAGTTACCTGGTAAGAGCTAGGTAGGACAGGCTTGCTATAAAAGGGCTGTTTGCCTCTCCTCATTCTCTCTCCCCCTTCTCACTCTCTGACTCTCTTCTTTCCCTGAGCCCTTTCTCCCTCTCTCTCCCTTGCCCCCCTCCATGTGTTCCTGGCTGGCCCCTCCTCCTCCTCCTCTTCCTCCTCCTCTCCCCCTCCTTATTCTCTTCTTCCTCCTCCTCCTCCTCTTCTTCCTCTTCTTCCTCCTCTTCCTCTTCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTCTCCCCCTCCTTATTCTCTTCTTCCTCCTCCTCTTCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTCCTCTTCCTCTTCCTCCTCTTCCTCCTCCTCCTCCTCTTCCTCTTCCTCCTCTTCCTCTTCTTCCTCTTCTTCCTCCTCCTCTTCTTCCTCCTCCTGCTCCTCCTCTCCCCCTCCTTATCCTCTTCTTCCTCCTCCTCCTCCTCCTCTTCCTCCTCTTCCTCTCTCTCTCCCTCTCTCTCTCCCTCCCCCTCTCTTTCTCTCTCTCATTTTCTCTGTCTGTACTTCCTTCTCAACTCCCCTTTCTATGCCCTACATAATCTCTATTCTACACTATACCCATCTTATGACTGGCACCTCAGGGGGAAGGGATGCCTCAGCATGGGCCTGCCGAGGCAACCCACCCACCTCACCACACCACACTCTACAAAACATATCTTGGCTTTCTTTTTATAAAACATGACATCCTCCCTTTTAGTCCATCACCTATCAGAGATAGTAGAAAGGAAAGGTTAATAAGACAAAGAAGAATGAAAACCCATTTAGAAATAGCCCTTTGGAGTGAGTCAAATCTGCATTGTCAGGATATCAGCGGTTTAGTTCACACAAGTCAGCAGCAGTAGCTCAGTCCACTCACAAACATCATTCACGAATCAGCAACGGCAGTTTGATCCAGAAGAAAATGTGAGGCTCTGACAATGGGCCCAAGTCCAACGAAGTGGTAAGAAGCCACCAGAACATCACTAGATGTTCTTTGGTGCATAGTAGAGAGCTACTAAGTCATGAGAAACAATGATGAGCAAAGAGTGGCAAGGTGAAGCAATGGCACACAGCACCACCCACTGTCTGGATTGTATTCATACCCTTTCCAAGCACCACATCTTCTCTCAAGCGTCTGCTCTAGCAAAGCATCACATGCCCTTTTGCCAGAAAAGCAGCTTCCAGAAAAACACCACATGTCTGTTCTCAGCAGAACATCCTCTCACGTGGCTGCTTCAGCAAAAACATCCTCTCATAAGACAGATTCCAGAAAAAATCACATGGCACAACTGAGTCTCAAAACAAAAACAAAAACAAAATTTCCAATTCATTTTTTGATTAATTTTTTTTCATACAATATATTTTGATAATGGTTTTACCTTCTTCCCCTCAGATCCTCCCCATCTAGAGATAATTTTTGAGACAGAATCTTTCTTAAAAGATTTAATTATTTGTATGTGTGTGCACATACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCCTGTATGAGTGTGTACTTGTTTACCTATGTGTATGTCAATGTACCACATGCATACTTGGTGCATGCAAAGCCAGAAGTAGGCATTGAATGCCCTGGAACTTGAGTAATAGACAGATGTTAGCCACTGTGTGAGTGCTGGAAATTGAACCTCAATCTTGTAAAAGAGCAGCTAATGCTCTTAACCACTAAGCCAGCTCTTCGGCCCCCAAAACTTACTCTTTAACCCAGGTTAGCCTCAAACTCATGGTGGTCCTTCTGCCCCAGCCTTTCAGATGTTGGGATTACAAGCATGAGTCAGCTTTTGTGGTCTATATTGGATATTTTTGAGCTTTGAAAGTCAGATAAAATCTCTTTAGTCACAGACAAAGTAACTGGTCTCAGAATTCCAAGCCAGATCTTCTGAAATTGGGCTCCCAACACTTCTGCCTCCTCATAGCTTTAGCCTCTACCATCCTCCTGTGGTCGTTTCTCTGGCTATTTCCCTTCACATTACCACTTTAAGTCTCTAGCTACCATTTCTTTGTTAGCATTGCTAATGGCTGTTCATTTCATTTCGTCAAGCTATTTCACCAGAGTAAAAGTGACATTTCTGTTTTCAATATCTTTCAG
Seq C2 exon
GGGAAATTACAGTGGCCATGAGTAAGAAATTCCTCAAGGCAGATATCCCTGAGAAAGAGTCGGATCAATGGATAGCAAAGGAAAGAGCATGTGCTAACTTGTTCAATTGGCAGTGCCAGGAAGGTCAGGAGGTGAAGTTGCAGCAAGTGGTCCTCACCCAGCAGAACACTCCATCAAAACTGAGTGAGCAGAGAGTCAGAGCAGAGAGCTCATCACCCATCCAAAGTCAGAGATCTCAAGCAAGCAAAACGGCTTTTGAATGCAGCGAATGCGGGAAAGCCTTCTCTAAGAGTTCCACCCTTAAGAAGCATCAGAAACTTCATACCGAAAAACTCAACCCAAGTCAGAAATCACCAATGAAAGAGAAGCGATACAAGTGCCGAGAATGTGGGAAAGCCTTCCACCAGAGTACACACCTCATCCATCACCAAAGAGTCCACACTGGCGAGAAACCATACCAGTGCAAGGACTGTGGCAAGGCCTTCTCAGTGAGCTCTTCCCTTTCCTACCACCAGAAAATCCATACCGGAGAAAAGCCCTTTGAATGTAATGTTTGTGGAAAGGCCTTTATCCGGAACATACATCTTTCCCACCATCATAGAATGCACACTGGAGAGAAACCTTTCCAATGCAACCTTTGTGACAAAGCTTTCGTTTGCAGAGCACATCTTACCAAACACCAGCACATTCACAGTGGCAAGAAGCCCTATAAATGTAATGAGTGTGGGAAAGCCTTCAATCAGAGTACAAGTTTTCTGCAGCATCAGAGGATCCACACTGGAGAGAAACCCTTTGAATGCAACGAGTGTGGCAAGGCCTTCAGGGTGAACTCTTCCCTTACTGAACACCAGAGAATCCACACTGGGGAGAAACCATATCAATGTATCGAATGTGGCAAAGCTTTCAGGGATAACTCATCCTTTGCACGCCATCGGAAAATTCACACTGGAGAGAAACCTTACAGATGTGGCTTGTGTGAGAAGGCTTTCAGGGACCAGTCAGCCCTAGCACAGCATCAGAGAACTCACACTGGGGAAAAGCCTTACACGTGTAACATATGTGAGAAAGCCTTCAGTGACCATTCGGCCCTTACCCAACATAAGAGAATTCACACGAGAGAAAAACCGTACAAATGTAAAACCTGTGGGAAAGCTTTTATCCGAAGCACACACCTCATTCAACACCAGAGGATTCACACGGGAGAGAAACCTTACAAATGTAACACATGCGGGAAAGCCTTCAACCAGACTGCAAACCTCGCTCAGCACCAGAGGCATCACACTGGAGGAAAGTGATAGAAAGGCAGTTAATAGGTGCTGAGGGGATGATGTCATTAATTATTGAATAGAAGAGAGTACATAATCACACTGAAGTCTTTTATCATCATGGTTGGATTTACTCGGAGCCAGGTTGCCTAATGCTAAGGGTCTTGAGAATCTTATGAATGGTGAACACACCTTACTCTTCAGTCTGCCACAGTTGGATAGTAGTGCCTTTTTATTGGCCTGAATTACTATTAGAACCAAAATGAAAATTCATTAAAAGCATAAATGTCAGTTTATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048728-Zfp454:NM_172794:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
No protein impact description available





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.379 A=NA C2=0.213
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0009621=zf-C2H2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=6.0),PF097235=Zn-ribbon_8=WD(100=10.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF097235=Zn-ribbon_8=WD(100=10.0),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=5.8),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.0)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000061824





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000104759, ENSMUSP00000129125
  



Associated events






Conservation


Human
(hg38)
chr5:178946987-178964654 
LOW PSI
HsaINT0187320
(ZNF454)
Human
(hg19)
chr5:178373988-178391655 
LOW PSI
HsaINT0187320
(ZNF454)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr7:2348592-2352719 
LOW PSI
BtaINT0165545
(ZNF454)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"