BtaINT0165546 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038951 | ZNF461
Description
zinc finger protein 461 [Source:HGNC Symbol;Acc:HGNC:21629]
Coordinates
chr18:47119396-47120613:+
Coord C1 exon
chr18:47119396-47119633
Coord A exon
chr18:47119634-47120518
Coord C2 exon
chr18:47120519-47120613
Length
885 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TTTTGAACCCTCTTATTCAGCAA
3' ss Score
4.69
Exon sequences
Seq C1 exon
ATCTCTAGTTCCCCTCCGAAGTCCTCCTCGCAGTCGTCGCCCTCCTAGTGGTAATCGGAGTCTGGGCACGGCGGGCACTCGCAGTGAGGAAGCCCCCACCCTCTGGCTCACACTGGGCGTGTGGAGCCTGCGTGTAAAAAGTGCGTGTAAGCGTTTGTGGCCGTAACGAGGCGAGTGTGTGTGCAGTGATGAGGCCGTGACAGGTGCAAAACGTGGGACCCATTGGCTCTGATGTGAG
Seq A exon
GTAGGTGACACTGTGGGGCTTGAGATTTCCCTTCAGAAGACGGTGCTGTTGTTACCTAGTGAGATGGAACCCAGTGTTAGTCGCTCAGTAGTGTCGGACTCTGCAACCCTATGGACTTGCTTACCAGTCTCCTCTGTCCACGGAGTTCTCCAGGCAAGAATACTGGACTGGGTGGCCATGCCCTTCTCCAGGGGATCTTCCTGACCCAGGGATCCAACCGGGGTCTCCCGCTTTGAAGGCAGATTCTTGACCAACTGAGCCACCAGGGATGCCCAATGGGGCTTTTAATTCTGTTACCGGGTGGGAGTTTGGTTGTGTCTGGGACAGAGCTTCATTTCTGCAGTTCTAGGTTTAACATCGGGACGGAGGGGTTCGGTTGAAGATCTCCCTGAGAGAATATATGCTCCTGTAAAGACAGACCTTTACGATGCGTGTATTAACTGGAGTCTCACTAAAGCATATTCTACTGCTTTGTCAGGGCACCCCCACCTCCAGTGCCCAGACTCCAGTGCTTAACACAAAAGTGAGTTATCAGTGGAGTGAGTGTTGCCTGCCTAGGGGCCAATTTTAGTTTCTATCCTTTCCTAGGATCTGTATCCTTGTATCACTGCTTTCTCTTTCCTCTTACTTTATAGCCAGGACCCCAACTGCAGAGAAATGGTCCTCCTGCTAAGGCCCTGGGCACAGTCCTTCTTGAATAGATAGCTGGATTCCCTCCTTGCTTTGAGTACGGTTGGAATTTGTCCAGCTTCTCTGTGATCTTTTATGTACGTGTGTTTGGGATCTGGGAATAGGAGACATAAAATGAGAGAAATGTTCTAAATTAGCACATTGGGAGCTCAGAGACAAGATCATCTCTTTTTTTTTTTGAACCCTCTTATTCAG
Seq C2 exon
CAACACTTTCTTTGGACTGTGAATTTCTTCTAAAGTGGAAACAAGAAGAAGACTAATAAATACTCTGAATTCTAAAAAAAAAAGCCATGGCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038951:ENSBTAT00000055644:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTAGTTCCCCTCCGAAGT
R:
ATTAGTCTTCTTCTTGTTTCCACTTT
Band lengths:
294-1179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development