BtaINT0165647 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001947 | ZNF514
Description
Bos taurus zinc finger protein 514 (ZNF514), mRNA. [Source:RefSeq mRNA;Acc:NM_001110091]
Coordinates
chr11:1939287-1942199:-
Coord C1 exon
chr11:1942111-1942199
Coord A exon
chr11:1939414-1942110
Coord C2 exon
chr11:1939287-1939413
Length
2697 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GGTTGTCTTCTGTGTTTCAGGAC
3' ss Score
10.4
Exon sequences
Seq C1 exon
TTCTCCCTTCTCAGGACCCTGCTCTTCCTCCAGAGAGAGGCCTAGGAGAAAAGGGAACAGCCAGTTTATTCCTGAAAGCCAGACCTCAG
Seq A exon
GTAAGTTGGGGTTCTCTTTAAGTTTTTCTCAAATGCCTGTTTTGCCTCCTTTTCTCTGTTTTGCCCCTTTTCCCTTGTTTGCCAAAGGGAACTGGACCCAATTCCTGCTCTGCAGGAGGCAGAGCCCATCAAGGCTTTTGCTGGTCTCCTTTCCCCAGGGCCCTCTGCTCAGTGAGACTGGGCCCCTGTGCACGTGTTATCTTCCTGGATTAGTGTGGTGACACACTGAGGACCCTGGCCTTGGGATTGGCGGGGGGAGGATCTTTTATGTGTCCTGGTTCTGCTGTCTGGTTATAGCTCCCAGTCCAGTGTTCTCCTTGGCTCTTGGCTCTGCCCTCCAGAAGTTCCTTCCTTTTGCAGTATCTCCCTTGGTTGCATATGAAGATGATATTAAACTTTTTTTGAGGGCTAAGCAGCTTTTTTATCCTGAGTAGTTTGATGGCCCAAGGATTGTTTCAAGTCTTGCACCTTCAGTGTGACTCTCAAAAACCTGACCAGCTTTTTGTGCATTTGCTTCCATTAGCTCCGTATATCAATAGCTTTTCCCACAGTTGTTATTGAAATATGCCCCTCTCTTTAGACTAAATTGTGGAGCTTTGGGGGTTTGCTTGGCAAAACCTTACTTTTAGTCACTCTGAGCAATTTGGTCCCACTGAGAGGATTTACTGGGAGCCATAACTGAACTGAAACAAAAGGTCTGACAATCACACTCATGACTTAGTCCTTGCCATTAGGCTGGGTTTTAATCATCTTTTGTCATGCAAAAGCTATATCTATTTTGTCTTTGACCAGTTGGAAATGAGAATTCATTAAATCTCCAACCTTGCAAGTCCTGGAATTTCTGGGACACTTTCTTCTTCTTTTAAAATATTAAAAAAAAATTTTTTTTTTTTGCTATGCCATGTGGCATGTGGGATCTTAGTTCCCCAACCAGGGATTGAACCCACTTCCCCTGAATTGGAAGCCCAGAGTCTTAACCACTGGACAGCCAGGGAAGTCCCTCTGGACACTTTCTCTTTGCCTTACATTTTTATTTTGCAAATCAGCAAACTCTTAGACTAATTTTTGTGTGTGTGTGTCATACTTTTGTCAAATGTAGCCAGTGACAACCAGCTCCTACCACTGATGTTATATTTCCCTCCTTGTCTCATCACATCACCAGCTCATGCTTGCATTGTTCCTCTTTCAAGTTATTGCATCAAGTTTTACCACACAGTTCACCACTAAATTACATGGGTTGCCGTCTTGCCAGTTGCTGCCTGGCCCTGAAGCCACTATCACGTATTTTAGGCTTTTGTATTATGGCAGAACTCCACCTGGAGACCAGCTTTTTTAATGAGTCAGTTGAGGCTAGTTATACTGTGATAACACAGCAAATCCTGAGGCGCTTACACCAACAACAGTTTATTTCTTGTCCACATTACATGCAAGCTATGGTTTTGCCCCACATCTTCACTCTGGGATCATTTGCCATTCTTAGAGCAGCAATTGTAGAAGCTGACTGTGAAAGCTTTTGCTCATAAGTAGCTCATGTCACTTGCTTCACATTCCAAATGTGAAAGTGAATGACTTGACTACACCTGAGTCAGTGGGGTAGGAAAATCAATTCTATAGGGAGGGCCAATGAATATTTTGCACAAATAGTACAATCTATCATTTGGCTCACTAAGGTAGTGAGTTTTCCACATTTGATTATTTTGGACTGCCTTTAATATAAAATTGTTAGTTTGGCTTATTCTGTGCAATCAGTATCTAAATGGGATTTGACTTTTAAACATTTTGAGGGGAAAGTAAAAGGAGTTTATACTACCTTCACTTACTTGCTTTTTAGTTCATAGTTTATGGCTTATTGTACAATGTAAGTCAATTGAAAGTATTGTCGTTATAGAGGCTGACAGGATAGTTCTGGCTGGGACCCACAGAATGGTTGTACCTTGTGAAGAACTGAGATCTGGGGTTCTCACTCTTAACTTTGCACATTTAGGAACTGAAAAATGATTAGGCTTTTTGGGGAGATGATTTATATTAATCAGACTCACAAAAGACTTACTCATTCACTGTCAGTCCATTTGACATACTTTCACTGAACTGTGTGCTGGCAGCTCTTATGGGATAAGTTATTCTAAGCCCCAAATGATTTTATTTGGCCTTAGTAAGAATTGTAATCGAAATCCTAGGCCACAACTTTCAAAAATACTTAGTTAGAAGACTATTGACACTATGATACACTCAGAATGCAGAGTTTGTTATTTTTATTTTATTTTGTTTTTTATTATTTTATTTTGTTTTTCAGTTTGTTATTTTTATTTTAATCAGTTTGTTATTTTTAATTGATTCTATTTAAATGTCACTAAATTGTGAGACATTCTGAAAATTGAGGAAATGGATTGTATTTATTTCTCCCACATAAGTGGAGTGTCTCTAAAGGTTTGATTCTCCTGAGGCCCTGATTATATTCCTAAGCAGTTTGGTGTTGAGATCTGTGGGCATTGCGTGGGATACTGAGTAGTAAGGATGACACAGTCCCTGGAGCAGCTTAAAATGTTTTTCAGATGGTAAAACCTGGCATTGCGATAGCCAGGAACTTTTGGAATCCCTTCTTGTACACCCTAAGGTTCTATTCAGACACCCGTCTCCCCTTCTCCCAGGGCCATGAGTGTGCTCTCCGAGGGTGCAAGGTTGTCTTCTGTGTTTCAG
Seq C2 exon
GACCTGATGACATTTGAGGATGTGGCTGTGGAATTCACCTGGTGGGAGTGGGGGCAGTTGGACCCTACTCAGAAGGACCTGTACTGGGAGGTGATGCTGGAGAATTTCAAGAACCTGGCCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001947:ENSBTAT00000053384:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development