HsaINT0187489 @ hg38
Intron Retention
Gene
ENSG00000144026 | ZNF514
Description
zinc finger protein 514 [Source:HGNC Symbol;Acc:HGNC:25894]
Coordinates
chr2:95153133-95157439:-
Coord C1 exon
chr2:95157351-95157439
Coord A exon
chr2:95153260-95157350
Coord C2 exon
chr2:95153133-95153259
Length
4091 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
GAGTGTCTTCTGTGTTTCAGGAC
3' ss Score
10.01
Exon sequences
Seq C1 exon
CTTCCCCTTCTCAGAATCCTGCTCTTCCTCCAGAGAGATTCCCAGGAGAAGAGGGAACAACCAATTCATTCCTGAAAGCCAGGCCTCGG
Seq A exon
GTGAGTTGTATTCTTAATTTTTCCTCAAATGCCTGAACGATGGTTAGCTTTGCCTACTTTTCACCAAAAAGTAGCCTCTTTTTTCACTAAGGGAACTGACCCAATGCTGTCTCTGCAGGAGGCTGAGCCCATCCAAGTGAATGATGGCTCCCTGACCTGTCCGGGGTGTTCTCTTCTTGCTGTGCACCCACTCAGATCGTTTGGGCTTACTCTGACATATTTCTAGAAAGGGCACTGTGGTGACCACCAGGTAATGTGACAGCCCTGGCCTTGAAAGAGTGTCACAGCCACAGTGGAAGAGGACCCTGACACCCAGGACGCAGCCACCAGTAACAGGATGTGAATGGTTTGATGCCAAATGGAGTGGCACAGACAGGCCTTTCCATCGAGGTTCACGAAAAGGGGAATCGGCCTGTTCTGGAGAGGTTGGGAAAGCTCATGGAGAATTGGGGACAAGCAGGTTCTGAGGGTATGGACAGGTGGGCAGGCTATTTGAAGCTGGGTCCCTGTTCAGATGTTATCTCCCTGGATAAGGGAGGAGGCACACTTAACTTTACTACTTACAGGCTGTGTGGCCTTGGATGAGTCACCTAACCTCTCTATGCATTGGTTTGCCACCAGTAACATGTTAAGCAGGCAGCAGTAACATGAAGACTATAATAATGTTAATGATGATGAAAATAGTTATTATTTATGGAGAACAAAACCTGTATCAGGAACTATTCTCTACAATTTACACATACTAATTCATTTTGTCTCTAAAACATTCCCATAAATGGTTACCATTTTGAAGAATGGTAACCAAAGTGTGGAGAGGTTAACAGAAGAAGTCAAGGCACAGAGAGAGAAAGTAACTTGTTCATGGTTATCTAGTTAGTGAGGAAGGGACCCCAATTTTACATCCAGGCTGTCTGGCTCTGAGATCTTAACCACTCAATCATAGAGCCGCCTCATGTTGTTGTTAGAGTCCGCTGGCAGTTCCGCTGGCAGATGGTAACTGCCTAATCCTTGTTGGCATCAGGGATCATGGTGACTGGCCCTCAGGGGGGATTCAGGTTTGTCTCTAGTGAGCTGGATGTGGAGGGGTACAAATGCCAGCCTCCGGGGTTTCCCAGCATCCAGGATAGGCATGGGATTCAGGTTTGATGATAGACACTGACATTTAACTTTCAAGCCAAAAGGGGGAACCCCCCTAGTAAGGAATTTAATCAGTAAAGTCATAAATAGCAGTTAAATATTTTTGGCCCTGATGTACATCATTCAGAGGTTTATCAGAGCACTTAGGTGGGTTCAGTGTGGTAATGACAGCCCCACATCTCAATGGCTCGCAGTTAGAAAGAGTGCCTTTCTTCTTTCTGCTGTCTTTGTCAGTAGTGGGCTGACTGTGACTCTGCTCCACACCCTCTTCTCTCTGAGCTTCAGGCTGAAGGGTCAGTTCCCTCTGGGATATGCTCTTCTTGTATCAGAGGGAAAGAGCAGTGTGAGAACCCGGGGATGGCTCTTTGGGTTTCCACTCAGAAGCGGCACATGTGGCTTCTGCTCACAACCCACTGGCTGCTGCAGGTCCTGTGGCCAAGCCTAATGTTAATGAAGTGGGAAGTATTAGCTTCCTAGAGTGAGGATCCTAAAGGGAAGGGCAGGGATTATGTTAAGCGAATAATTCATCTATCACTGTATATTTTCTTACCCATAGATGTTCACTTCCCTCTCTCCTGCACACAAAATGCCCTCCAAGAGAAATAACCCAAGAGCTGCATCCAGTCAGAGCATCATGATCAAAGTCCTGGATGGCGCGATAGTCTGGATGGAGATCCTGTGGGTCTGGATACCTATAAACTAAAAGGACAATTACCTGAATCCATATATCCAATATACAATGAGCAATGGGGACAGGATGGCCATGGTAGACACTCCTTTGCAGAAGAGGGAAGCATGGGAAGAGTCAGTCCCGGGTCCATAACAGTCGTGAAATTCCACTGGACAGACACTGTGAGGACCCTTGGTCTTGGGAGTGGGAAAGTCTGTAGGTTACACCCTGGTTCTGCTCCCTGGGTGGAGCTCCCTGGCCTAGTGTTTTCCTTGGCTGTTGGCTTTGCCATTGGGAAGTTCCTTCGTTTTGATACCTCCTTGGTGTCATATGAAGATGATACTGGAGAATAAGCTTTCTTGGGGGCAAAGCAGCTTTTTCATCCTGCTGGAGTAGGTTGGTGGCCCAGGATTGTTTTAAGTGCAACTCTAAAAAACTTAATCAGCTTTTTATGAATTTGTTTCCAGTTGGCTCCATGTGTCAGTGGTTTGACCCACAGTTCTTTTTGAAATATGCCCCCTTCTTTAGCCTTAATTGTGGAGTTTTTGGATTTCCTTGGGAAATCTATACTTTTTTCACTCTGAACAATTTGGTCCCACTGAAAGCCTTTATTGGGAGCCTTTTGAAATTACTGGGAGATTTACTGGGAGCCTTTTGAAATTACTCAGAGGTTTAAACAAAAAGGTTTGACAACCACATCCATGATTTGGTCCCTGATAATGGGCTGAGTTTTAATTAGCTGTTGTCACGCAGAAGCTGATGTATATTGTCTTTGGCCAGTTGGAAATGAGAATTGGTTGTCTCCAACCCTGCAAGCCCTAGCATTTCTGGACATTTCCTATTGCCTTCCATTTTTGTTTTGCAAACCACAAACTCTTGAGCTCATTTTTTCTTGTAATACTTTGTCAAACTCAGCCAATAACAACCAGCTCACACTACTAATGTTATGTTTCCAGCCTCTTCTCATAACATCACAAGCTCATGCTTTCATTGTTCATCTTTCAAGTTACTGAAGGCAATAGTTTCACCAAACAGTTCACCACCAAATTACATGGGTTGCCACCTTGCCAATAAGTTTCTTCACTGCCTGGCCTGGATGCCAGTGTCATCTATTTTTGGCTTTTTGTTATGGCAGAACTCCACTGTGAGTACCAGTTTTTTAAGGAGTCAGTATAGGCTAGTTATGCCATGATAGCAACAGCAAACCCTCAGAGACTTACACCATGAAAGGTTCCCTCTTGCCCATGTTACGTGACAGCTGTGGCTTTGCCCACATCTTCACTCAGATCATTTGCCATTTGCAAGGCAGACAGGAAAGGACAATTGCAGAACCCCCACTGGCTCTGAAGGCTTTTGCTCACCTGTAGCTCGTGTCTTTCACGTTCAGTTTGAGAAAGCAGATGACATCGCCCCACCTGGGGCAGGGTGAGGCAGAAGCTCAATTCTTTAGGGAGGGTCAGTGGATATTTTGGACAAATAATATAACCTATCAAAAGAGGTCACTATAGTAGTGAATTTTTCATGTTTGATTATTTTGGATGATTTTATATTATAAAATTGTTACTTCAGCTTTTCTGTGGAATCAGTATCTAAATGGGATTTGATTTTTAAATACTTTGGTGTAAAAGTAACAGGAATTTGTAGTACTTACTTTCACCTATTTTGCTCTTTAGTGGATTGCCATACAATATAAGCTAAATGGGAGGTGTTCTAATTACTGAGATTGAAGGTGACAGGATAGTTCTGGCCAGGACCTGTAGAATAATTATGCTTTATAATGGTGACCTGGGATCCAGGGTCTCATGCTCAGCTTTATAAACTTAGGAACTGAATAATGAGTAGGCTTTGGGGGAAAGGATCATGCTAGTCAAACGCACAAAACTTATTGTTTCATCATAAAGCCACTTGTGATTTACTTTTGCTGAACTGTGTGCTGGCAGGCAGGTGGAGGATAAATTATCATAAGCCCCAGATTACTTGATTTGGCCTTATTGTTGTCAGAATCATAGGTCACAAGTTTCAAAAATACTTTATTAGAAAACTGTTGATCCTTGTGTATTTGAGAATGCAAAGCATATTCATTTGTTAATTCTAATTGATTCCAATTAAATGTAACTAGATTGAGAATAAAACCTTTTGACAAATGAGGAAATGTATTACATTTACCTCCACCTGAGAAGAATGTCTCTGTAGGCCTGATTCACCTGAGACCCTGATTATATTTCCTAGCAGTTTCATATTGATAAGCATATAAGTGGACACTGGAGTGTCTTCTGTGTTTCAG
Seq C2 exon
GACCTGATGACATTTGAAGATGTGGCTGTGGAATTCAGCCAGTGGGAGTGGGGGCAGCTGAACCCTGCTCAGAAGGACCTCTACAGGGAGGTGATGCTGGAGAACTTCAGGAACTTGGCCATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144026:ENST00000295208:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains