HsaEX0073832 @ hg38
Exon Skipping
Gene
ENSG00000144026 | ZNF514
Description
zinc finger protein 514 [Source:HGNC Symbol;Acc:HGNC:25894]
Coordinates
chr2:95153133-95157439:-
Coord C1 exon
chr2:95157351-95157439
Coord A exon
chr2:95155362-95155657
Coord C2 exon
chr2:95153133-95153259
Length
296 bp
Sequences
Splice sites
3' ss Seq
GTATATTTTCTTACCCATAGATG
3' ss Score
9.53
5' ss Seq
ACTGTGAGG
5' ss Score
3.71
Exon sequences
Seq C1 exon
CTTCCCCTTCTCAGAATCCTGCTCTTCCTCCAGAGAGATTCCCAGGAGAAGAGGGAACAACCAATTCATTCCTGAAAGCCAGGCCTCGG
Seq A exon
ATGTTCACTTCCCTCTCTCCTGCACACAAAATGCCCTCCAAGAGAAATAACCCAAGAGCTGCATCCAGTCAGAGCATCATGATCAAAGTCCTGGATGGCGCGATAGTCTGGATGGAGATCCTGTGGGTCTGGATACCTATAAACTAAAAGGACAATTACCTGAATCCATATATCCAATATACAATGAGCAATGGGGACAGGATGGCCATGGTAGACACTCCTTTGCAGAAGAGGGAAGCATGGGAAGAGTCAGTCCCGGGTCCATAACAGTCGTGAAATTCCACTGGACAGACACT
Seq C2 exon
GACCTGATGACATTTGAAGATGTGGCTGTGGAATTCAGCCAGTGGGAGTGGGGGCAGCTGAACCCTGCTCAGAAGGACCTCTACAGGGAGGTGATGCTGGAGAACTTCAGGAACTTGGCCATTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144026_MULTIEX2-3/3=2-C2
Average complexity
S*
Mappability confidence:
86%=86=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCTTCTCAGAATCCTGCT
R:
CCAGAATGGCCAAGTTCCTGA
Band lengths:
214-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development