BtaINT0165694 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012606 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr18:54941833-54942597:-
Coord C1 exon
chr18:54942442-54942597
Coord A exon
chr18:54941879-54942441
Coord C2 exon
chr18:54941833-54941878
Length
563 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GGGTCTGGGGTCTGGCGCAGGCA
3' ss Score
3.94
Exon sequences
Seq C1 exon
GTGTTTGGCATGGAGTTTTGCAAGCCCTCAAGACAGGTGCTGAGGCCAGAGGGGGATGGGCAGAGTCCCCTGGGAGCCAGAAAGTGCCTGGACAACCCAACCGCAGCCTCTTTGGGGGTCCCTGTGGCCCCAGCAAACCGCCCCCCAGGGAGCAAG
Seq A exon
GTGAGTGCCGATCAGTCCACCTCCATCCCGCCACTCCCACCTGCCAATGGGAGCCGTGGGAAAAGCCCCGAACTCCTGACTCTGGAAGAGCTTAGTTTCAATCCATTCATTCATTCACCCTCCACTGGACTTCCTCTGTGTCTGACTCTGCACTGGGGACACGGCAGCAACCACAGCAGCCTGTCTCCTGGGGCTCCCGGCCCAGTGGAGTGGAGAGCCCCCATCCCCAGACAGTGACGCGTGGAGTGGGCTGGGCTGGGCTGGGCTGGAGGGGGAGCCGAGGGAGCTGTGGGAGCCCCAAGGGGGCACCAGAGACCAGCCTGAGCAGGCCAGGGAGGACTTCCTGGAGGAGGGGGTGTTAGAGCTGAGATCTAGAAGACGAGAAGGAGTAAGATGGGGGTGAGGGGGAGTGGATTGCATGGAGGTGAGAGAGAGCATACTGAGCCGCGAGATCAGTGAGTTTCCAAAATGGTCTGAGGGAGGGCCTCTCCCTGGGGGTGTGGATGCATGAGAAGGCTCCAGCTTCGCACACCGCCCAGCTCAGGGTCTGGGGTCTGGCGCAG
Seq C2 exon
GCATGGTGGCCCTGCCCGGCTGCCTCTGCCGAGGGCTGTGGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012606:ENSBTAT00000061246:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=NA C2=0.188
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development