MmuINT0179442 @ mm9
Intron Retention
Gene
ENSMUSG00000078796 | Zfp541
Description
zinc finger protein 541 [Source:MGI Symbol;Acc:MGI:3647699]
Coordinates
chr7:16668348-16668921:+
Coord C1 exon
chr7:16668348-16668409
Coord A exon
chr7:16668410-16668569
Coord C2 exon
chr7:16668570-16668921
Length
160 bp
Sequences
Splice sites
5' ss Seq
GGGGCTGGG
5' ss Score
-12.07
3' ss Seq
GATACAACAGGTGCTCTCAGGTG
3' ss Score
-2.02
Exon sequences
Seq C1 exon
GCAGCTCTGAGCCTCAGGATGTCACCATACTGAGTATGTTAGTCAGCTCTGGCTCATGTGGG
Seq A exon
GCTGGGCTATGAACAGAAGGTCCTACTCAGCTCCTATGCTAAACCCCGGGAATGGCTATGGCAAACATACACATCCTCCTTCCCCCTGTCCCTATGACAAGCCCCATTTTCCCATCCCTGAACAAGCTGAAGACTGAGTTGATACAACAGGTGCTCTCAG
Seq C2 exon
GTGACACCTGTGGTTCTGTCCTCTCTTCTTCAGGGACAAGAAAAAGATGGGGAAGAGAGAGACAGCAAGGAGAGCTGCCAGTACAGAAAGCGGAAGAAGCGGCCCCAGCCCAAGGCCCTGTTTGCCCCTCCTGCACCCTCTGCCCTCGGGGAACCAGGCCCAGGAGGGTGCCACCAGAGCTGCCTGCACTCTCCTGTGTTCCTGGTGGATCACCTCCTGAAGGGCTTGTTTCAGTGCTCTCCCTACACACCACCGCCTATGCTTAGCCCGATTCGTGAGGGCTCTGGGCTGTACTTCAATACCCTCTGCTCCACATCCAGGGCTGGGCCCCACCTTATCAGCCCTGTACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078796-Zfp541:NM_001099277:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.354
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCTCAGGATGTCACCAT
R:
AGGAACACAGGAGAGTGCAGG
Band lengths:
258-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: