BtaINT0165697 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012606 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr18:54938713-54939525:-
Coord C1 exon
chr18:54939462-54939525
Coord A exon
chr18:54938856-54939461
Coord C2 exon
chr18:54938713-54938855
Length
606 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
TGGGTGTGTCCTCGTTTCAGACA
3' ss Score
8.53
Exon sequences
Seq C1 exon
ATCCCCTGGATGACTCCTTCGGCATCTGTCTGGTGAAGGACGACACCAAGATCAGCATTGAACC
Seq A exon
GTGAGTTGGGACAGAACCTGAGGATCCTTCCAGAACGGGGACGCTCTTACCCTCTGCGCATTCCCGTGTGGCTCTGTCGGCACCTTCATCCCAGGGAACCCGGTCTAGGTGCTGAGCCTCTCCAGGAGAGAAGTGCTGGGCTTCTCCGGCTGTCCCCCCTCAGCAGTCCGTCTGTCCGGACATACCGTAGTTGGCTCCCTGAGGATAGAAGGCCCAGAACACTGGGGCTCTGGAGAGAACTGCCGGTGGCACAGGGGGACACGCGTGCAGGGCCGTGGACTGCGGCTAGATGAGGGGACCTCAGATGTAGAGGCAGGCCAGGTGTCAGCACACACCTCCCTGGTCCTAGACCCCAGACGGCTGAGGCCAGAAACCTGGCGACGAAATCGGAGGAGGGCGTTGAGTGTCCCTCAGGAGGTTTCTGGAACGCCTGCGTGTGTCTGTTGGGGTAACGAACACTTCGTGTGTCTGAAAGACGGCAGAGGGCATCCACAGAGCAGGGCCGTGGCCCAAGAGCAGACTCACGGGGCGTCTCTGCTCTACTTCCCACCTTGGTCACGCATCGTACGTGAGTCTTGTACACCTGTGGGTGTGTCCTCGTTTCAG
Seq C2 exon
ACACATCAACATAGGAAGCCGGTTTCAGGCTGAAATTCCAGAGCTCCAGGACAGCTCTTTGGCTGGGATTGATGAGCATGTCGCTTCTCTGGTCTGGAAGCCGTGGGGAGATGTGATGAGCAACCCGGAAACGCAGGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012606:ENSBTAT00000061246:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0144819=ELM2=PU(79.3=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCCTGGATGACTCCTTCG
R:
CTCTGTCCTGCGTTTCCGG
Band lengths:
207-813
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development