HsaINT0187583 @ hg19
Intron Retention
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:25294]
Coordinates
chr19:48035385-48036229:-
Coord C1 exon
chr19:48036166-48036229
Coord A exon
chr19:48035528-48036165
Coord C2 exon
chr19:48035385-48035527
Length
638 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
TGTGTGTGGCCTCATTTCAGACA
3' ss Score
7.81
Exon sequences
Seq C1 exon
ATCAAGTGGATGGGTCCTTTGGCATCTGTGTGGTGAAGGATGACACCAAAATCAGCATTGAGCC
Seq A exon
GTAAGTTGGGTCCTTTCCAGTGAAGCTGCTTTTACCCCACCTTGAGTTCTAGTGTCACTTTTCCCAAGGGTTCCTTCTTCCCATGGTGGGGTTCAGGTTTACTCACATAGGCTCCCTAGGCGTGAAGCGGTAGATTTTTCCAAATATATGTAGGAAGATCCCCCAATATTATTCCTTCTACAAATATATATATATATATGAAAATCCCCCCAAATTATTCCTTCTAGAAATATATATGTGGCACATGGGGACAGAATGCCCTGGACCTTGGGGTTCCAGGTAGAATTGGTGATGGCACAGAGTGGGACTCAAGCATGCCTGAGGGATGTGGCTGGATGGCTGTGGTGTGGACGTAGACACATGCCGGGTGTCAGCTTGTACCTCCCCTGCCTTGACCCTGAGAGAGAAATGTGGCAATGAAGGAAAACAGAGGAAGGGAGGAAGTGTCCCTGCAGAAGTTTCTGAAATGTCTGTGTGCATCTGTCGGGAACAGCACGTACCTGATGCACCTGAGACAGCAGAGGGTTTCCATGGAGCAGGCTGTGGCCCAAGAGCAGGGCATACAGAGCGTCTCCATTTCACTTCCCATCTCAGTCATGTTTGTACGTCTCCCTTATCTGTGTGTGGCCTCATTTCAG
Seq C2 exon
ACATATCAATATAGGAAGCCGGTTTCAGGCAGAGATCCCGGAACTCCAGGAGAGATCCCTGGCTGGAACTGACGAGCATGTAGCTTCTCTGGTCTGGAAGCCATGGGGAGATATGATGATCAGCTCAGAGACACAGGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156-ZNF541:NM_001101419:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0144819=ELM2=PU(79.3=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGTGGATGGGTCCTTTGG
R:
CTCTATCCTGTGTCTCTGAGCTGA
Band lengths:
206-844
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)