HsaEX0073898 @ hg19
Exon Skipping
Gene
ENSG00000118156 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:25294]
Coordinates
chr19:48034899-48036229:-
Coord C1 exon
chr19:48036166-48036229
Coord A exon
chr19:48035385-48035527
Coord C2 exon
chr19:48034899-48035002
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGGCCTCATTTCAGACA
3' ss Score
7.81
5' ss Seq
GAGGTGGCT
5' ss Score
1.4
Exon sequences
Seq C1 exon
ATCAAGTGGATGGGTCCTTTGGCATCTGTGTGGTGAAGGATGACACCAAAATCAGCATTGAGCC
Seq A exon
ACATATCAATATAGGAAGCCGGTTTCAGGCAGAGATCCCGGAACTCCAGGAGAGATCCCTGGCTGGAACTGACGAGCATGTAGCTTCTCTGGTCTGGAAGCCATGGGGAGATATGATGATCAGCTCAGAGACACAGGATAGAG
Seq C2 exon
TGACCGAGCTCTGCAATGTGGCATGCTCCAGCGTGATGCCAGGAGGGGGCACCAACCTGGAGCTCGCTCTGCACTGCCTGCACGAGGCTCAGGGCAACGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118156_MULTIEX1-4/8=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.041 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0144819=ELM2=PU(79.3=93.9)
C2:
PF0144819=ELM2=PD(19.0=31.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTGGATGGGTCCTTTGGC
R:
GAACGTTGCCCTGAGCCTC
Band lengths:
164-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)