RnoEX0101508 @ rn6
Exon Skipping
Gene
ENSRNOG00000021800 | Zfp541
Description
zinc finger protein 541 [Source:RGD Symbol;Acc:1310756]
Coordinates
chr1:77985560-77986647:+
Coord C1 exon
chr1:77985560-77985623
Coord A exon
chr1:77986101-77986243
Coord C2 exon
chr1:77986544-77986647
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGGCCTTGTTTCAGACA
3' ss Score
8.22
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
Exon sequences
Seq C1 exon
ACCAAGTGGACGGCTCCTTTGGCATCTGTGTGGTGAAGGATGACACTAAAATCAGCATCGAACC
Seq A exon
ACATATCAACGTAGGAAGCAGATTTCAGGCGGAGATCCCAGAACTGCAAGAGAGGCCGCTGACCAGAGTAGATGAGAATGTAGCTTCTCTGGTCTGGAAGCCATGGGGAGATGTGATGACCAATCCAGAGACCCAGGACAGAG
Seq C2 exon
TGATGGAACTCTGCAATGTAGCATGCTCCAGTGTGATGCCAGGAGGGGGCACCAACCTGGAGCTTGCCCTGCACTGCCTGCATGACGCCCAGGGCAGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021800-'11-12,'11-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.082 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0144819=ELM2=PU(79.3=93.9)
C2:
PF0144819=ELM2=PD(19.0=31.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTGGACGGCTCCTTTGG
R:
CAGTGCAGGGCAAGCTCC
Band lengths:
138-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]