MmuEX6008501 @ mm9
Exon Skipping
Gene
ENSMUSG00000078796 | Zfp541
Description
zinc finger protein 541 [Source:MGI Symbol;Acc:MGI:3647699]
Coordinates
chr7:16675146-16676260:+
Coord C1 exon
chr7:16675146-16675209
Coord A exon
chr7:16675709-16675851
Coord C2 exon
chr7:16676157-16676260
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGTGTATGGCCTTGTTTCAGACA
3' ss Score
7.12
5' ss Seq
GAGGTGGCT
5' ss Score
1.4
Exon sequences
Seq C1 exon
ACCAAGTGGACAGCTCCTTTGGCATCTGTGTGGTGAAGGATGACACTAAAATCAGCATCGAACC
Seq A exon
ACATATCAACGTAGGAAGCAGATTTCAGGCGGAGATCCCAGAACTGCAGGAGAGGCTGCTGGCCAGAGTGGATGAGAATGTAGCTTCTCTGGTCTGGAAGCCATGGGGAGATGTGATGACCAACCCAGAGACCCAGGACAGAG
Seq C2 exon
TGATGGAGCTCTGCAATGTAGCATGCTCCAGTGTGATGCCAGGAGGGGGCACCAACCTGGAGCTTGCCCTGCACTGCCTGCATGATGCCCAGGGCAGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078796-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0144819=ELM2=PU(79.3=93.9)
C2:
PF0144819=ELM2=PD(19.0=31.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTGGACAGCTCCTTTGG
R:
CAGTGCAGGGCAAGCTCC
Band lengths:
139-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: