MmuEX6008501 @ mm10
Exon Skipping
Gene
ENSMUSG00000078796 | Zfp541
Description
zinc finger protein 541 [Source:MGI Symbol;Acc:MGI:3647699]
Coordinates
chr7:16089797-16090911:+
Coord C1 exon
chr7:16089797-16089860
Coord A exon
chr7:16090360-16090502
Coord C2 exon
chr7:16090808-16090911
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGTGTATGGCCTTGTTTCAGACA
3' ss Score
7.12
5' ss Seq
GAGGTGGCT
5' ss Score
1.4
Exon sequences
Seq C1 exon
ACCAAGTGGACAGCTCCTTTGGCATCTGTGTGGTGAAGGATGACACTAAAATCAGCATCGAACC
Seq A exon
ACATATCAACGTAGGAAGCAGATTTCAGGCGGAGATCCCAGAACTGCAGGAGAGGCTGCTGGCCAGAGTGGATGAGAATGTAGCTTCTCTGGTCTGGAAGCCATGGGGAGATGTGATGACCAACCCAGAGACCCAGGACAGAG
Seq C2 exon
TGATGGAGCTCTGCAATGTAGCATGCTCCAGTGTGATGCCAGGAGGGGGCACCAACCTGGAGCTTGCCCTGCACTGCCTGCATGATGCCCAGGGCAGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078796_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0144819=ELM2=PU(79.3=93.9)
C2:
PF0144819=ELM2=PD(19.0=31.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTGGACAGCTCCTTTGG
R:
CAGTGCAGGGCAAGCTCC
Band lengths:
139-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types