BtaEX6083212 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012606 | ZNF541
Description
zinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
Coordinates
chr18:54938258-54939525:-
Coord C1 exon
chr18:54939462-54939525
Coord A exon
chr18:54938713-54938855
Coord C2 exon
chr18:54938258-54938361
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGGGTGTGTCCTCGTTTCAGACA
3' ss Score
8.53
5' ss Seq
GAGGTGGCT
5' ss Score
1.4
Exon sequences
Seq C1 exon
ATCCCCTGGATGACTCCTTCGGCATCTGTCTGGTGAAGGACGACACCAAGATCAGCATTGAACC
Seq A exon
ACACATCAACATAGGAAGCCGGTTTCAGGCTGAAATTCCAGAGCTCCAGGACAGCTCTTTGGCTGGGATTGATGAGCATGTCGCTTCTCTGGTCTGGAAGCCGTGGGGAGATGTGATGAGCAACCCGGAAACGCAGGACAGAG
Seq C2 exon
TAACGGAGCTCTGCAATGTGGCCTGCTCCAGCGTGATGCCCGGCGGGGGCACCAACCTGGAGCTGGCACTGCACTGCCTGCATGAAGCCCAGGGCGACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012606-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0144819=ELM2=PU(79.3=93.9)
C2:
PF0144819=ELM2=PD(19.0=31.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGACTCCTTCGGCATCT
R:
CTGGATGTCGCCCTGGGC
Band lengths:
162-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]