BtaINT0165782 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005240 | ZNF605
Description
zinc finger protein 605 [Source:HGNC Symbol;Acc:HGNC:28068]
Coordinates
chr17:44972443-44973509:-
Coord C1 exon
chr17:44973495-44973509
Coord A exon
chr17:44972564-44973494
Coord C2 exon
chr17:44972443-44972563
Length
931 bp
Sequences
Splice sites
5' ss Seq
AAGTGGTTT
5' ss Score
-14.09
3' ss Seq
CAGGGATTATACTTTTTTAGATA
3' ss Score
4.65
Exon sequences
Seq C1 exon
ATGTGCCCAGCTAAG
Seq A exon
TGGTTTAGTCGCTCAGTCTTCTCCAACTCTTTGTGACCCATGGACTGTAGCCCACCAGGCTTCTCTGTCCACTGGAGTTGCCATTTCCTTCTCTAGGTAATCTTCTCGACCCAGGGATTGAACCACATCTCCTGTGTCTCCTGCATTGCAGGTGGATTCTTTACCCACTGAGCTCTCAGGGAAGCCCTTGCCCAGCTAAGAATTATTCCCAAATCCCAGTGGCACCTTCTTTGAGAAACACTGCTTGTTTAAAGACAGCCTATTCCAACTTCTTATCCTATGGGTAGATGGGTGGATAAGTTTATGAATTCATAATGATGAATATTTTAATAACTCTTTTGTTTTTCTCTCAAAGTATAATAGTGCAAGATTAGGATATCATTTTACTGTGTAGAGAAAATTATCCCAAACCTCAGTGGCTGAAGTTTAAACATTTATCTCAGTTTCTGTGAGTTAGGAATCTGCCAGTGGCTCACCCATTTGGTTCTAGTGGAGAATCTCACACGACCCTGTCTTCAAAATGTTGAGAATTGCTGTGGTATGAAGGTCACACACTTCAAGCTTACTCACATGGGTGTTGGCAGACCTCTGGTCCTTGCCACGTAGGCTTGTACACAGAGCTGCCTCACCATGTGGCCCTTGGACTTCCCGAAAGAGAGCAGGAGAGGGTTCCCAAGGTAGAAGTCATGTCCTCTTGTAACCTGGTCTTGGAAGGGAGATCCCTTACTTCTACCCTATTCCATTCAGTGGAAGTGACTTGATAAATCCAGCCCATATTCAGGACGTGGGGCAGTGAGGGTTAAACAAAAGCACATTTCCAGGAGTTGGAGATCATGGGTCCAGCTTTCAGGCCACTTGTTGCTGTAGAAAAGGAAGCCTACATTCAGCAAAGAGAATGACTTCAGATTTAACAGGGATTATACTTTTTTAG
Seq C2 exon
ATATCGTTTGAAGATGTGGCTGTGAATTTCACATTGGAGGAGTGGCAGCTGCTTAATCCTACTCAGAAGACCTTGTACAGAGACGTGATGTTGGAGAACTATAGCAATCTAGTTTTATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005240:ENSBTAT00000006896:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=100.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development