BtaINT0165894 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016496 | ZNF641
Description
zinc finger protein 641 [Source:HGNC Symbol;Acc:HGNC:31834]
Coordinates
chr5:32102305-32104238:+
Coord C1 exon
chr5:32102305-32102396
Coord A exon
chr5:32102397-32104108
Coord C2 exon
chr5:32104109-32104238
Length
1712 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GATGCTGCATTTTGTTTCAGGGC
3' ss Score
9.07
Exon sequences
Seq C1 exon
CTCAGTCCACTCCCTGGGTTCCTGCCATTCCCCAAGAAGGGAGCACTGGAGACTGGGAGATGGCAGCTGCACTTCTTGCGGCGGGATCACAG
Seq A exon
GTGGGCTATGTTCTTCTCTTGGCCTCTCTCAAGGTCTCATCACTGCTGCCTTTCTGTAGCCTTTGTGTCATTCCATTGGGCTTCCCTGGTGGCTCAGATGGTAAAGAATCATCCTGCAGTGCAGGAGACCTGAGTTTGATCCCTGGGTTGGGAAGATCCCTTGGAGAAGGGAACGGCTACCCACTCCAGTATTCTGGCCTGGAAAATTCCATGGACAGAGGAGCCTGGCAGGCTACACAGTCCACGGGGTTGTAAAGAGTCAGGCACGACTGAGTGACTTTTACTTCATTTCATTTAATTAATTTGTCATTTCACTTGATCACTATTGGTATTTAGTCTGATATCTTCACAGATTCTATCCCTTTCTAAGGAACTTATAACCTTTTGAAAAATGAATGGAGGCATGATGAGAAGAAGAAAATTCCTACAGATTGAGTTTGTTTTGTTTTAATAGATAGCTATGCTAGCCACAGGGAGAATTTAAGAAAAATTCATTAATGTTTATTAAGAAATAAATCTTGGGCTTTCTGTTTGTCCAATGCTTAGGAATCTACCTGCCAATGAAGGGGACACAGGTTTGATCCCTGGTCTGGGAGGATTCCACATGCCATGGGGCAACAAAGCCCAAGTGCCACAACTACTGAAGCCTGTGCACCCTAGAGCCCGAGCTCAATAACAAGAGAAGCCACCACAATGAGAAGCCCATTCACTGCAACTGGGGAGTAGCCCCTGCTCACCACAACTAGAGAAAGCCCATGCACAGCAACAAAGACGCAGCACAGCCAAAAATAAATAAATTACTTTAAATTTAAAAACAGAAATCTGGAAAGATTAGGAAAAGAGGACCTGGAGGAAGCTTGGAAGAACATAAAGTAGACTGGATTAGGTGGATGATGGAGCATTTATGGACATGAATAAAAGATAGAAAGATATGAAGAGGGGCAGCACCAGAGACAGAAAACAAGTTTAGATTCAGAAGGCAAGGGGAGAGCCATGGGAAGTTAGTAATAATAGTAGTTGTAGTATCCACACTCCCAGAGTGCTTACCATGTTTGCTGCTCTTTGAGTGCTTTATGTACATTAACTCGTTTAACCCTGAGAGAAACACAGTTATCCCCAGACAAGAAAATTGGACAGGAAGAGGTTAAGGCACTTGTGTAAGGTCATACTGCTAATGTAAGTGACAGAGCTAGGAGTCATTTGGCTCCAGAATCTGGGCTCCTAACTGTCAGACTCTGCTGCCTTAAAAGATAAGGACATGGCATAATAGGGGGAGGAGGCCAGAAAGAATATTTTATCCATATTGTTTTGTACAGATAGGAAAGGAAAGGTCAAGTAGAGAAAGGAGGAACTTGTACACAATTTCTGCAGTGAAGAAAGGCAGCAAGAATAGTCCAAGAAAGGCAGATGAGAAGAGACTGGGTAGACATTTGTAACTACACAGAGGGACCAATGAGTTTGTGGTGCCTCCAACTTCTCATGGTCCCAACTTGGGAGTCTCCTCTACAGACATTATTGCTCACACCCTGACCATTACTTTTACCCCTTTCCTCGTCACCAAAACCATGTTCCCTGCCCAGGAACCTCTGGGCAGTTCTTTTTCTAGACCTTCTCTTGCCACCTCTCCTCTACTACCACCTTAGCCTTCTATACTGAGACCCCATTTTCCTTAAAGAACAGCTGCTGACAGATGATGCTGCATTTTGTTTCAG
Seq C2 exon
GGCCTGGTAACCATCAAGGATGTGTCACTGTGCTTCTCTCAGGAGGAGTGGAGGAGCCTGGACCCTTCTCAAACAGACTTCTATGGAGAATATGTCATGCAGGAAAACTGTGGGATAGTGGTCTCCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016496:ENSBTAT00000021929:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=NA C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTCCACTCCCTGGGTTC
R:
GGAGACCACTATCCCACAGTT
Band lengths:
218-1930
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]