RnoINT0168534 @ rn6
Intron Retention
Gene
ENSRNOG00000032447 | Zfp641
Description
zinc finger protein 641 [Source:RGD Symbol;Acc:1310412]
Coordinates
chr7:139903172-139904578:-
Coord C1 exon
chr7:139904487-139904578
Coord A exon
chr7:139903302-139904486
Coord C2 exon
chr7:139903172-139903301
Length
1185 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AACTGCCTGTCTTGTTTCAGGGC
3' ss Score
10.89
Exon sequences
Seq C1 exon
CACCGTCTGCTCCCTGGGTTCCTGCCGTCCCCCAGGAGGGGGACACTGGAGACTGGGAAATGGCAGCCGCACTTCTTGCAGCTGGGTCCCAG
Seq A exon
GTGAGCCGTGCTCCCCTTGTTCTACAGCTGGGGCACCCTCCCACTGGCTTGCTACTTCCCGTGAACGCTAAGGTGTGCTTGTAACGGGATAGATTCTGTTTAAGGGATGTACCACGGTGTGTTGTTGGGTGAGTATGTTATCTGCGGGATGGGGGTGGAGAGTTCAGAATGACTAGTTGATCCGATTGTTTTAGGAAGAAAATCTGAAACCAGGCATGGTGGTGCCTGCTTGTAATTCCAGTTACTAGGGAGGCTGTTGTAGGAGGGCAGCTTGAGCCCAAGAATTTTGGGCCAGTCTGTGTGGCACAGTGAGACCTTATGAGAGAGAGAAAGAAAGAAAGAAAGGAAAGGAAGGAAGGGAAGGAGGGAGGGAGGGAGGAAGGAAGGAAGGGAAGGAGAAGAAAAATCCTGGAAAAGGTGAGAAAAGAGGGGCCAAGAATGCTTTGAAGATCATCAAGTAGACAGGGAGGTGTAGATCATGGAGCTTTTGCAAAGAGCTGGAAAGAGAACGTAAGTCGAGAGAGTAGCGGTGGAAGGATAGCAGTGTTGGCAGCGGCAACATCTCAGAACGCTTACCATGTGAAGCCTTCCTACGTACTTTATACGTACTAAATACCGTGAGAACAACTCAGTCGCTCCACTCCGAGAACACTGGGGCAGAGGAAGATGGAGGCCTTTGGATGGTGCCACTCCTGCGGTAGTAGCTAAGATCCATTCGCCTCCAGATTTTGGGCTTATCCGTTGTGTTGTAGCACCCGGGGGACGTCATCAGCACTCCAGGGAGACAGGCATGTTCTGTTTCTATCGTGCTGTGTTGACAGAGAAGGGAAGGTCAAGTGGAGGAAGGAGGCTATGGTACAGTCTACAGGAAAGACTGAGGCAGGTAAGAAGGGATACAGTAGACACCTGTAGCTAAGCCACGGGCCCGACGGATCCTGGAGCCTCTGACTCCTCAGGGTCTAAGTCGGGAGCTTGCTCTCATCACTTTACCCGCGTTCACGTCTCGGTCTCGTTTCCTTTTTTCTCTTTAAGAAAGCCACGTGCCTTGCCTAGTGAGTGACCTGCTAGTGGGTTTTCTTCAGGGTCCCCTCTTGCCCTCCTTCGTCCACCGCCTCAGCCCTTCACAGTGAGGTCGTGTTTCCCGTCACAGCAGCTGCTAACAGACAACTGCCTGTCTTGTTTCAG
Seq C2 exon
GGCCTAGTAACTATCAAGGATGTGTCCTTATGCTTCTCTCAGGAGGAGTGGCGGAGCCTGGACCCCTCCCAGACAGACTTTTACGGAGAATATGTCATGCAGGAAAATTGTGGGATCGTCGTCTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032447:ENSRNOT00000045473:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=NA C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGTCTGCTCCCTGGG
R:
TCAGAGAGACGACGATCCCAC
Band lengths:
222-1407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]