HsaINT1047599 @ hg38
Intron Retention
Gene
ENSG00000167528 | ZNF641
Description
zinc finger protein 641 [Source:HGNC Symbol;Acc:HGNC:31834]
Coordinates
chr12:48345345-48347343:-
Coord C1 exon
chr12:48347252-48347343
Coord A exon
chr12:48345475-48347251
Coord C2 exon
chr12:48345345-48345474
Length
1777 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GATGCTACATTTTGTTTCAGGGC
3' ss Score
8.12
Exon sequences
Seq C1 exon
CTCAGTCTGCTCCCTGGGTTCCTGCAATTCCCCAGGAGGGGAACACTGGAGACTGGGAGATGGCAGCTGCACTTCTTGCGGCTGGATCACAG
Seq A exon
GTGAGCTCTGCTTCCCTTGGCGTCTCCTGTGGTCCCATCACTGCTGCCTTTGTATTGCTTTCGCATCAGCCCATTGATGAGTTGGCTCACATGATCATCAATGGTATGTTCATCTTATAACTGAATAGATTCTATCCCTTTCCAAGGGGTCATAAGACCCTTGGAAAATTAAATGGACCTACAAGAAAGGGAATTCCTTGAGGTTAGGGTTTTTTTGAGTTTTGTTTTGTTTTTTGTTTTTGAGACAGAATCTCACTGTGTTGCCCTGGTTGGAGTGCAGTGGTATGATCTTGGCTCCCTGCAACCTCCACCTTCTGGGTTCAAGCGATTCTTGTGCTTCAGCCTCCCAAGTAGCTGGGACTACTGGCACACGCCACCACACCTAGCTAATTTTTGTGTTTTTAGTAGAGACAAGGTTTTGCCACGTTGGCCAGGCTGGTCTTGAACTGCTGACGTCAGGTGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGGGTCACAGGTATGAGCCACCGTGCCTGGCCAAGGTTAGGGTTTTTAATGGATGGCTGTGTTTGTTATCCACAGGAGGATTTTAAGAATAATTAATTACCTTCCTTTAAGAAATAAATCTGGAAAGATTAGGAAAAGAGGACCTGAAGAAAGCTTAGAAGAACCTAAAGTGGAAGGATTGGGTAGATGAGGGAGCATTTATGGAAAAGAAGAGGAAGAAGGTTATAAAGAGGGGCAGAGCTAGAAAGGAAATTAGGTTTAGATTCAGAAGGCAATAGGAGAGCTGTGGAAAGCTAATACTAATAGTGTTAGTACTAATAGAGTACACCCCCAGAGTGTTTATCATGTATGCCATTTTCTGGGTGCTTTATGTATATTAACTCATTTAATTCTGAGAACAACTCAGTTATCCAATTTTACAGATGAGGAAATGGGGCAGGGAGAGATTAAGGCACTTGTGTAGGTCATGCTGCAAGAAAGTGGCAAAGCTGAGTCACTTGGCTCCAGATTCTGAGCTCCTAACCACCATACTGTGCTGCCTAAAAATATAAAGATATGGCCAGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCAAATCACAAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAACACCACAAAAAAAATAGCTGGGTGTAGTGGTGGGTGCCTGTAATTCCAGCTACTTGGGAGGCTGAGACAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCGGTGAGCCAAGATTGTGCTACTGCACTCCAGCCTGGGCGACAGTGAGACTCCGTCTCAAAAAAAAAAAAATGCTGTGGCAAGGGAGGCAAGAAAGAATGTTTTATCTGTAGCATTTTGTGCTGATAGAAAAGGCAGGGTCCAGTGGAAGAAGGAGGAAATGGTACATAATTTCTTCATAAAAAGAGTAAGGCCAGGGAGAAGTGACTGAGTAGACACCTGTAGCTAAACAGAGGTGGTGATGAGTTTATGGTGCCTCCAGCTTCTCATGGCCCCACTTGGGAAATTCCTCCAGTAACATTACACTCACTCACTCCTTGACCATCTACCTTTACTCCTCTCCTCATTTCCCTGTTACCAAAACTATGTGCCCTACCCAGGGACTTCTGGGCAGCTCTTTTCTCAGATCATTTCTCACCCTCTCTCCTCTACTAACTTAGCCTTTCATACTGAATCACATTTTCCTTAAAAAACAGCTGCTGACAGAAGATGCTACATTTTGTTTCAG
Seq C2 exon
GGCCTGGTAACCATCAAGGATGTGTCACTGTGCTTCTCTCAGGAGGAGTGGCGGAGCCTGGACCCCTCTCAGACAGACTTTTATGGAGAATATGTCATGCAGGAAAACTGTGGGATAGTAGTCTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167528:ENST00000544117:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.670 A=NA C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTCTGCTCCCTGGGTTC
R:
TCAGAGAGACTACTATCCCACAGT
Band lengths:
222-1999
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains