RnoALTA0045797-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000032447 | Zfp641
Description
zinc finger protein 641 [Source:RGD Symbol;Acc:1310412]
Coordinates
chr7:139903172-139904578:-
Coord C1 exon
chr7:139904487-139904578
Coord A exon
chr7:139903260-139903301
Coord C2 exon
chr7:139903172-139903259
Length
42 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AACTGCCTGTCTTGTTTCAGGGC
3' ss Score
10.89
Exon sequences
Seq C1 exon
CACCGTCTGCTCCCTGGGTTCCTGCCGTCCCCCAGGAGGGGGACACTGGAGACTGGGAAATGGCAGCCGCACTTCTTGCAGCTGGGTCCCAG
Seq A exon
GGCCTAGTAACTATCAAGGATGTGTCCTTATGCTTCTCTCAG
Seq C2 exon
GAGGAGTGGCGGAGCCTGGACCCCTCCCAGACAGACTTTTACGGAGAATATGTCATGCAGGAAAATTGTGGGATCGTCGTCTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032447-3-10,3-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=NA C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGAGACTGGGAAATGGC
R:
TCAGAGAGACGACGATCCCAC
Band lengths:
137-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]