RnoEX0101611 @ rn6
Exon Skipping
Gene
ENSRNOG00000032447 | Zfp641
Description
zinc finger protein 641 [Source:RGD Symbol;Acc:1310412]
Coordinates
chr7:139903172-139904578:-
Coord C1 exon
chr7:139904487-139904578
Coord A exon
chr7:139903604-139903734
Coord C2 exon
chr7:139903172-139903301
Length
131 bp
Sequences
Splice sites
3' ss Seq
GCTTATCCGTTGTGTTGTAGCAC
3' ss Score
7.04
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CACCGTCTGCTCCCTGGGTTCCTGCCGTCCCCCAGGAGGGGGACACTGGAGACTGGGAAATGGCAGCCGCACTTCTTGCAGCTGGGTCCCAG
Seq A exon
CACCCGGGGGACGTCATCAGCACTCCAGGGAGACAGGCATGTTCTGTTTCTATCGTGCTGTGTTGACAGAGAAGGGAAGGTCAAGTGGAGGAAGGAGGCTATGGTACAGTCTACAGGAAAGACTGAGGCAG
Seq C2 exon
GGCCTAGTAACTATCAAGGATGTGTCCTTATGCTTCTCTCAGGAGGAGTGGCGGAGCCTGGACCCCTCCCAGACAGACTTTTACGGAGAATATGTCATGCAGGAAAATTGTGGGATCGTCGTCTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032447_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=0.476 C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.5)
Main Inclusion Isoform:
ENSRNOT00000045473fB16985
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCTCCCTGGGTTCCT
R:
TCAGAGAGACGACGATCCCAC
Band lengths:
218-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]