MmuEX0053516 @ mm10
Exon Skipping
Gene
ENSMUSG00000022987 | Zfp641
Description
zinc finger protein 641 [Source:MGI Symbol;Acc:MGI:2442788]
Coordinates
chr15:98291171-98292977:-
Coord C1 exon
chr15:98292886-98292977
Coord A exon
chr15:98291600-98291661
Coord C2 exon
chr15:98291171-98291300
Length
62 bp
Sequences
Splice sites
3' ss Seq
ATATCATGTTGTGTTGACAGAGA
3' ss Score
5.73
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CAACTTCTGTTCCCTGGGTTCCGGCCGTTCCCCAGGAGGGGAACACTGGAGACTGGGAAATGGCAGCCGCACTTCTTGCAGCCGGATCCCAG
Seq A exon
AGAAGGGAAGGTCAAGTGGAGGAAGGAGACTGTGGTACAGTCTACAAGAAAGACTAAGGCAG
Seq C2 exon
GGCCTAGTAACTATCAAGGATGTGTCCTTGTGCTTCTCTCAGGAGGAGTGGCGGAGCCTGGACCCCTCGCAGACAGACTTTTACGGAGAATATGTCATGCAGGAAAACTGTGGGATCGTCGTCTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022987_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.884 A=1.000 C2=0.189
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(3.1=3.2)
A:
NO
C2:
PF0135222=KRAB=FE(90.6=100)
Main Inclusion Isoform:
ENSMUST00000023722fB4693
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACACTGGAGACTGGGAA
R:
AAAAGTCTGTCTGCGAGGGGT
Band lengths:
136-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types