MmuEX0053516 @ mm9
Exon Skipping
Gene
ENSMUSG00000022987 | Zfp641
Description
zinc finger protein 641 [Source:MGI Symbol;Acc:MGI:2442788]
Coordinates
chr15:98121602-98123408:-
Coord C1 exon
chr15:98123317-98123408
Coord A exon
chr15:98122031-98122092
Coord C2 exon
chr15:98121602-98121731
Length
62 bp
Sequences
Splice sites
3' ss Seq
ATATCATGTTGTGTTGACAGAGA
3' ss Score
5.73
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CAACTTCTGTTCCCTGGGTTCCGGCCGTTCCCCAGGAGGGGAACACTGGAGACTGGGAAATGGCAGCCGCACTTCTTGCAGCCGGATCCCAG
Seq A exon
AGAAGGGAAGGTCAAGTGGAGGAAGGAGACTGTGGTACAGTCTACAAGAAAGACTAAGGCAG
Seq C2 exon
GGCCTAGTAACTATCAAGGATGTGTCCTTGTGCTTCTCTCAGGAGGAGTGGCGGAGCCTGGACCCCTCGCAGACAGACTTTTACGGAGAATATGTCATGCAGGAAAACTGTGGGATCGTCGTCTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022987_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.871 A=1.000 C2=0.111
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(3.1=3.2)
A:
NO
C2:
PF0135222=KRAB=FE(90.6=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACACTGGAGACTGGGAA
R:
AAAAGTCTGTCTGCGAGGGGT
Band lengths:
136-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: