BtaINT0165933 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030951 | ZNF655
Description
Bos taurus zinc finger protein 655 (ZNF655), mRNA. [Source:RefSeq mRNA;Acc:NM_001075261]
Coordinates
chr25:37393332-37394656:-
Coord C1 exon
chr25:37394445-37394656
Coord A exon
chr25:37393495-37394444
Coord C2 exon
chr25:37393332-37393494
Length
950 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGA
5' ss Score
1.65
3' ss Seq
CTCCTCATCTCACTCCGCAGTGA
3' ss Score
8.7
Exon sequences
Seq C1 exon
CCCGGAAGCCGTCCCGAGGTCGCGTTGGGTCGGAGCCTTGTTTAGCCTTCTGGGGCGGAGCAGGAATCTCCTGGCTCCGGCTGACGGCGGTTCCCGTCTCCAGGAGCGCGCAGGGCCGGGGTGCGACAACCAGTTTCTCTTCAGTCAGGGTTCGCCCCGACGCCCGGCGGACGGAGGGCCCGGCCATCAGGACCCAGTGACCGTGGCCTGCT
Seq A exon
GTGAGATGGGTTTCCGGGGCCCGCTTCTCTCTTTTGGGACCTTTCCTTGACAGAGCAGAGAAGTGGGAGGACGGTAGCGCCGGGCGAGGCCTTCTGAGGGCCCTTTCTGAGGGTGTGGAAGGGGGACGGGGCCCTGCCGCGTCCTTGGGTGTGAAGGACAACGAGTCCGACCTGTTTGAGTCGCAGCCCTTCCCTGTTCCTGTCAGGGTCATGGGAAGAGGCCTGCCCACCTAGTCTGAGTTATCGAAGGGTCTGACCCCCAAAGTGGAATTTAGTCGTCAGTCACGGCTTCCCTTGTGGCTCAGCTGGTAAAGAATCCGCCTGCAATGCGGGAGACCTGGGTTCAATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGGAAAGGCTACCCACTCCAGTATTCTGGAGTGGAGAATCCCATGGACTGTAGTTCATGGGGTCAGAAAAAGTCGGACTCGACTGAGTGACTTTCACTCACTCATTCACTCAGGGTTACTCAGTAATTCAGAATGGGCTGACAGTGTTTACCAAATAATTCCTCAGGGTCTTGCTTTAAAAAATAACGAGTAATAATGTATTTCTCAAGAATTAATGTATTTCTCTCGGTACACACTTGATCCTTGAAAGAAGTTTGTAAATTTCAGGTATTTTGAATTCCAACAGATATCTCTGTACTATTAAATTGTCTTGTCTTTATTTTAAAAAATTCTACAAGTTCAGAATTAGTGGAGTTCAAATAAACCTGCAAACTTGGACCATATGACATGGTTCTTAACTGTCTGAAAGTGAATGATGTCCATTTTTCTTTCTGCTCTATATTTAGGTGGTTAATTGTTATTAAGTATTTTCACTGTGTCTGCAGTGTGTAAGATACTTGGTTAAGTCATGAGGGTGTCAAATGATGGGCTATTTTAACTTGTTACAATAATTTCTCCTCATCTCACTCCGCAG
Seq C2 exon
TGATGGTCATTGTCCTCCAGAACAGGGATGGAGGAGGTATCAGCCCAGGAAGCAGCAGAATCTCCAGTGGTCCAGTTTCAGTCCTTGGAGACCCACTCTGAGGGTCTGTCCCCAGAGCCTCAGTTCGTGCAGGACACCGACATGGAACAGGGACTCACTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030951:ENSBTAT00000025885:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.935
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGAGCCTTGTTTAGCCTT
R:
GTGAGTCCCTGTTCCATGTCG
Band lengths:
342-1292
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]