HsaINT0188015 @ hg19
Intron Retention
Gene
ENSG00000197343 | ZNF655
Description
zinc finger protein 655 [Source:HGNC Symbol;Acc:30899]
Coordinates
chr7:99156448-99158318:+
Coord C1 exon
chr7:99156448-99156640
Coord A exon
chr7:99156641-99158155
Coord C2 exon
chr7:99158156-99158318
Length
1515 bp
Sequences
Splice sites
5' ss Seq
CTGGTCTGT
5' ss Score
3.05
3' ss Seq
CTCTTAATCTTACCTTGCAGTGA
3' ss Score
9.35
Exon sequences
Seq C1 exon
TGGCAGCTTGTTTTGCCTTCACGGGAGTAGAAGGAGGCGGCGTCCGGCCGCGGCCGACGGTAGTTCGCTTCCCCGAGAGTGCGCGGAGGCCCGGGTGCGAGGAGGGCCTGTTTCTCTTCAGCCCTGGTTCATTCACCTCGCGGACCGAGGGCCCCGCCGTCAGGAGCCGGCGACCGTGCCCTGGTGCGAGCTG
Seq A exon
GTCTGTATGTCCTCACTGGTCCTTTTGGGACTTTGCCTTGGCCTAAAAGGGAAGTGGGAGGAGGGCAGCGCCGGGCAAGGCCTTCTGAGGACCGAGCTGGGAGCCGGGCAGGGGCCCAGGGCGAGGGTGGTGGGAGGGGGACGGCACCCTCATGCGTCCTTGGGCCTGAAGGACGCCGCTCAAACCTGTTCGAACCGCAGCTCTTACCTGCGTTGCTCTCAGGATTCCGGGAAAAGGCCGGTCTAGCTGGTCTGAGTTAGCGAAGGGCCTGACCCCAAAAGTGGAGTTTTATTCGCCAAGCCCGTGTAGTAAATCGGAGTGGGCTGACGGTGTTACCAAGACATTTCCTAGGGGGCCTGCTGTTTTATTTATTTAAATGAGTTTATTTACGTAAACGCGGGCCTGTCACGGTGGTTCACGCCGTAATCCCCGCACTTTGGGAGGCCGAAGTGGGAGGATCGCTTGAGGCCAGGCGTTCGAGTCCAGCCTGGGCAACATAGCGAGACTCCCATCTCTGCTAAAACAAAATTAAAATAAAATGAGCAATCATAACTAGCATTTTTCTCTGGGCACCAACTTGAGCCTCCAAAGACGATTGTAAATTTTAAATATTTTGTTTTGTTTATTTGAGGTGGGCTGTCACGCTGTCATACAGGCTGGAATGCAGTGGCGCAGTCATAGCTCACTGCAGCCTCTACCTCCCAAGCTCAAGCGATTCTCCTGCCTTGGCCTTTGGAGTAGCTGGAACTACAGGCCTGGGCCACCTAATTTTTTTTTTTTTTTTTTTTTTTGTAGGGACGGGGTTTCACCATGTTGTCCAGGACGGTCTGGAACTCCTGAGCTTAAGGGATCCACCCGTCTGTGCCTCCCAAACTGTTGGGATTACAGGCTTGAGCCACCGCACGTGGCCAATTTTAAATATTTTAAAGTTTCCACAGAAAGCTTTACACTATTAAATTGTACCGTGTTAATTTTTTTAATGCCACAAATTCCAAATTAGAGACTCTTCTATGATTTGGTTCTTAAGTATTTAAAGCTGAAGCATATCCATATTTCTTTTTCTTTTTTTTCTTTTTTTTTTTTTTGGGACGGAGTCTCACTGTGTTGCCCAGGTTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCCACGTATGCCTTCTGTATTCAAGCAATTCTCCTGCCTCAGCCTCCCGAATAGCTGGGATTACAGACCCGCACCACCACGCTGGCTAATTTTTGTATTTTTAGTAGAGAAGAAGTTGCACCATGTTGATCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCTTCCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCCACTGCGCCTGGCCCCATTTTTCTGTTACTTATTTAGGGTGGTTAATCATTATCAACTAATTTTTATTGAATATCCATAGTGTGTAAGATCCTTTGCAAAGTCCTGACGATATAAAATGATGAAATGCTTTAACTTATTACAGTAATTTCTCTTAATCTTACCTTGCAG
Seq C2 exon
TGATGGTCATTGTCCTCCAGAGCAGTGATGGAGGAAATACCAGCCCAGGAAGCAGCAGGGTCACCAAGGGTCCAGTTTCAGTCTTTGGAGACCCAGTCTGAGTGTCTGTCCCCAGAGCCTCAGTTTGTGCAGGACACCGACATGGAACAGGGACTCACTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197343-ZNF655:NM_001009958:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.924
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000252713, ENSP00000322363, ENSP00000350530, ENSP00000377718, ENSP00000389260, ENSP00000390295, ENSP00000392244, ENSP00000392980, ENSP00000393750, ENSP00000393876, ENSP00000395799, ENSP00000396396, ENSP00000398872, ENSP00000401282, ENSP00000401282f9748A, ENSP00000408555, ENSP00000414007, ENSP00000414969, ENSP00000419135
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTGTTTTGCCTTCACGG
R:
GTGAGTCCCTGTTCCATGTCG
Band lengths:
348-1863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)