BtaINT0165939 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000803 | ZNF667
Description
Bos taurus zinc finger protein 667 (ZNF667), mRNA. [Source:RefSeq mRNA;Acc:NM_001102078]
Coordinates
chr18:63883888-63885584:+
Coord C1 exon
chr18:63883888-63883978
Coord A exon
chr18:63883979-63885457
Coord C2 exon
chr18:63885458-63885584
Length
1479 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CATCTGCTTTTCCATTTCAGGCA
3' ss Score
10.87
Exon sequences
Seq C1 exon
GTTCACCTTCTCAGTGCTCTTCCCTCCTCCAGCTGTGAGCCCTAAGACAGAGGAGAGGATGCCTGCGGCTCGGGGGAAGTCCAAGTCCAAG
Seq A exon
GTGAGCACTGCTCTTCCTTCGGGAAAGTTCTTCTGCCTTGTAGGAAACCATTTCTTTCCTTCCAGCCCCATGAAGACGTGGTCCCTGGTTTCCTTCCATCACCTCAGAGGGTGGGAGCGTGAGTAGGGGCCCCCTCTCCTTTTTTCTCAGTGTGTGCATGACCTTTCACCTATGCATTCAGCATCTCCAGGGGCTCTGCCTGTCTTCCCTCCCCAGAGAGAAGGCCAGAGACACCGTGATTTCTCAAGGTGGACATGAGTGCCCAGGTGGGACCTGCTGGGGCAGAGGGCTAGATGTTGTCCTCCAGAGTTAATCTCTAATGTTGCCGTTGTTTCTACTTATACAGCCCGTATTTACGAGGAGGAAACTTCTCTAACTTTGCGAGACTTCTGACCCTGTTGGTATTCAGGTAGAGTTAGTTGGACCCAGGCCAGTGAGGCAGCCGCCTATGATAGGCATGTTTCAAGATTTTAGCAGTCAAGCAATTTTCTACAGTAAGCCTCCTGAATGCAGTTTCTCATAATGGACACTTTTGCCCTTTAAGTTGTGTGTATTCGTTCCCCATTGCTGCAAACTTGGCCATTCAAGACAGCATACAGTTATTTTCACAAGTTTGTGGGTTGGGGTTCAGACCCAGCTTGGGTTAGCTGGGTCCTCTGTTTTGGGTCTCACAAGAGTGAAATCAAGCTGTCCGCCAGCTGTGGTCCCATCTGATGCTCAGGGTCCTCTTCTGAACTCAGTGGTTACTGGCAAAATTTCATTCCTTCTCCTCTGCTTCCCGAGTGGCTCCCTTTGTCCCATCTTCAAACCAGCATCAACAGGTCCAGTGCCACTCATGCTGCAGATCTCCCCGACTTCCCTTTCCGCTTTCCTCTTCCGCCAGCTGGAGAAAATCCTTTGCTCCTGGGGGCTCCTGTGATGACACTGAGCCGACCTAGATAATCCAGGCTACTTCCTTCTATTTCAAGGTCAACTGATTTAACCTTGATAACATCTGCAAAAATTTTGCCACGTATAATGCACTCACATCTGGTTAGGGACATGAATCACAAGCAGGACTGCCCAGACTGAACCCCAGCTTCTCCATTTACAAGCTGTTAGACCTCTAGTAAGTTACCTCACCTCTCTCGGCCTCAGTTCCCGTATCTGTACCATTGCTGTGGTCCTCTGGGCAGTGCCCCAGTCACTGCCTAACATGGGCTAGTGCATGCAGGGTACCTAGAAGAATGCCTTGTCTTTGTCAGTGCCGTGTAAATCCAAGTTGATGTGCAAGTTGATGGAACAAAACCTTTAACACCAGCTGTATCATATTGCATTGTGTTTTATTTATTACAACTGCCCCTTTTGATCTCAGAACCTCAGTGTTTCCTTAATAGAACCCTGGCATCATGTGTCTTCCATGTTTGGAAGTCCCCTGTTTTCTCCAGCCGTGTGGCAGCACAAGCCCGCAGTGAAAGGACATCTGCTTTTCCATTTCAG
Seq C2 exon
GCACCAGTGACATTTGGGGATTTGGCCATCTACTTCTCCCAGGAGGAGTGGGAATGGCTGAGCCCCATTCAGAAGGATCTGTATGAAGATGTCATGTTGGAAAACTACCAGAACCTGGTTTCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000803:ENSBTAT00000001064:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.515 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTCTCAGTGCTCTTCCC
R:
CCAGGTTCTGGTAGTTTTCCAACA
Band lengths:
206-1685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development