MmuINT0179687 @ mm10
Intron Retention
Gene
ENSMUSG00000054893 | Zfp667
Description
zinc finger protein 667 [Source:MGI Symbol;Acc:MGI:2442757]
Coordinates
chr7:6289358-6290662:+
Coord C1 exon
chr7:6289358-6289437
Coord A exon
chr7:6289438-6290535
Coord C2 exon
chr7:6290536-6290662
Length
1098 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GTAATTTTCTTTCATTTCAGGCA
3' ss Score
9.05
Exon sequences
Seq C1 exon
CACTCTGCCTCAGTCTGAATGTGGACCATCAGCAGCGGGAGGAAAGGATGCCTGCAGTCCGCGGGAAATCAAAATCCAAG
Seq A exon
GTAAGTGGTGACTGTAACCCTGGCTCATTCTGGTCCCGCACAGTCACCCCCTCCCCCCCCCGCCCCCCCCCTGCCCCCCCCGCCCCCCCCCCCCGCAACCATTTTCATGGGAGTAATACCAATAGCCAACCCAGAGCGAGGCCTAGGTACTCTATATAAGTTTTCCTGGAGCTAAGGAAGATGGCAGTGGCTCATCAGATAAAGGCACCACCACCAAGCCTGGCCACTTGAGGTTGGTTCTCAAGACTTACATTGTGGTAGGAGAGAATGTCAAACTGTCTCCTGACATCCATCTCGCACCATGGCACATCCCTCTCCACGCACACACACAAATAAGTAGATAAATGTAAAACAAAAAGTCAGAAAAAAAGAAATAAAGGCCAGGTTCAATAATATCCACCTGTAATAATATCCACCTGTAATAAATCCCACTGCCCCTGGAGCTCCAGACTGAGCGAGAGACCCTGGCTCAGAAAACAAGGTGGAGAACAGCTGACCGACCCCGGCTCTCCATCTGCCTGGTATGTGTGCACCCTTACACATGCACACGCCCAAATGAACGTGTACATCTGTCTATCCTCCACCCCGTACACATCATCTTCCTGTGTTGTGATGAACCACTGGTAACCGGATTAAAGAACAGATTTCAATTTGGAAGGAGCCGGACGGTACGATTGAATGCCAGCTCCATTATTTAGTAGCTATGTGAAACTGGAATAATTTACCTCACCTCTCTAGGTCCTAGTTTCCTCATTTGTAGTATTACTATGATCCTCTTGGCAATGCCTTACTACTACTAAGGGTGATTACTGAGTGAAGCAGTATAGTTAGGTACTTAGAGAAAAAAATGCCTTGACTATAAAAACCAGTAAGTCCAAATTGCTGTTTTTTTTAAAGCAGCATAATCTTTAATAACAGTTTCATTATTTTATTACGTTATTATGTTATATGCTATTAAATTTATTTAATACCTCTGCTCTTTTGGTCTGTTAACCCCTGTCATGATATGTCGCCTGTAGTCACCATTTTTCTCCAGCCCTGCAGAAAGCACTTTTGAAGCTCCTGGTTGAATAGACTCGTAATTTTCTTTCATTTCAG
Seq C2 exon
GCACCAGTGACTTTTGGGGACTTAGCCATCTACTTCTCCCAGGAGGAATGGGAATGGCTGAGTCCCATGCAGAAAGATTTGTACGAGGATGTCATGTTGGAGAACTATCACAATCTAGTCTCAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054893:ENSMUST00000086327:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTGCCTCAGTCTGAATGT
R:
AACTGAGACTAGATTGTGATAGTTCT
Band lengths:
206-1304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types