HsaINT0188045 @ hg38
Intron Retention
Gene
ENSG00000198046 | ZNF667
Description
zinc finger protein 667 [Source:HGNC Symbol;Acc:HGNC:28854]
Coordinates
chr19:56460689-56462429:-
Coord C1 exon
chr19:56462338-56462429
Coord A exon
chr19:56460816-56462337
Coord C2 exon
chr19:56460689-56460815
Length
1522 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CATTTGATTTTTCATTTCAGGCA
3' ss Score
8.9
Exon sequences
Seq C1 exon
CCCTGCCTTACCAGCTCTCTGCCCATCTCTCAGTGTGGACCCTAAAGGGGGAGGAAAGGATGCCTTCTGCACGGGGGAAATCCAAATCCAAG
Seq A exon
GTAAGTGGCAATTCCTCTTCCTTCCGGAACACCCCATCGTGTCTTGTGAGATGTGGACCATTTGCTTTCCTTCCATGGAGACTTGTTGCCTGTTGGAGATCCATCCAACACCTAGTCTTTGGTTTTCTCCCGTTGCCATGAGGGATGAGAACCTGAGAAGGGCCCAGCAGCCAGGAAACTGCTCAGCGAGCCTCTCTCCATTCCCAGTGTGCACATGGCCACTGGCCTGTTTGTTTAGCATTCCCAGGGGCTTTGCCAGTGCCAGGAGAAATGCCCTCCCCAAGAGAAATGTCCTCCGTGGAGGAAGATGAGAGCCACTGTGATTTCTCAGCATGGAGATGAATGCCCAGGTGGGGCCTGCAGTAGCAGAGGGGACTTGACATGTGCTCTGGAGTTAGTCTTGTTGTGTGGTTTTGTATCTCCTTGTAAAACCCATATTTACATGGAGGAAATCTCTTTAACTAAGGTCCCAAGACTAAAAGGCACCACATAGCCCTGCTATTCCATTGACTGCACTGGTGCAGGCAGTGAGGTTGTATGCGTAGCCTCCTGTGGTCAGCATGCTCCACGACTGTCAATCATTGAGTGGTTTTTCCAACAGGCATCTCAAATGCAGTTTCCCATAACAAATGTGTTTGCTTTCAGTTGGGTGTATTAGTTGCCCCTTGCTGCTGTAACAGATTAGCTGCAAACTTGGCAGCTCAAAACAGCACGTGTTTATTATCATGCAGTTTTGTGGTTGGCGTCCAGGCACAACATGGTTTAGCTGGGTCATCTGCTTTGGAGTTCACAGGGCTGAAATCAAGGTGTCAGCCGGCTGTGTTCTCATTTGGGGCTCAGGTCCTCTTCCAGACTTGCTGGTTATTGGCCAGATTCAGTTCCTTCCTACACTTTCCACCTGACCCTCATTTTTCATCTTCAAGACAGCAAGAACCAATAACCAACTGGCCAGGTCAAGTCCAAGATAATCTGCCAAGGTCAAGTGATCAGTAACCTTGATTATACCCTCAAAGAACCTTTTGTCATGTGTAACATATTCACATGTTTCTTGGAGAGCAAGTGGTTAGGAGATTAAATCAGGAGCTGTCTGGGCTGAACACTAGCTTCTCCATTTACTAGCTGTGAGACCTGCAGTAAGTTTTCTCATCTCTCTGGGCCTCAGTTTCCTCATCTGTAACATACTGTGATTCCGCTGACAGTGCCTCTATCACTGATTCACATGAGCACTAAGTGAGCCAGTACAGTCAGGTGCTTAGAAGAATGCTTTGACTTTGTAAATGCCTGGTAGATCCAGGTTGCCACGTGTTCTTAATGCAACATAATTTTAATAACAGCTATGTCTTATATTGTATTTTATTTAACTTATTTAATACACCTGCCCCTTTTGGCCTCAGAACCCTGAATGCTTCCTGAATGATTCTTGGTACCTTGTGTCTCCCATGTTTAAGATGTGTGCACCATTTCCTCCAGCCATGTGGAAGCACAAGTCCATGGTGAATAGACATTTGATTTTTCATTTCAG
Seq C2 exon
GCACCTATAACATTTGGGGACTTAGCCATCTACTTCTCCCAGGAGGAGTGGGAATGGCTGAGCCCCATTCAGAAGGATTTGTATGAAGATGTCATGTTGGAGAATTACCGGAACCTGGTCTCGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198046:ENST00000292069:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCCTTACCAGCTCTCT
R:
GCGAGACCAGGTTCCGGTAAT
Band lengths:
216-1738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains