HsaINT0188045 @ hg19
Intron Retention
Gene
ENSG00000198046 | ZNF667
Description
zinc finger protein 667 [Source:HGNC Symbol;Acc:28854]
Coordinates
chr19:56972058-56973798:-
Coord C1 exon
chr19:56973707-56973798
Coord A exon
chr19:56972185-56973706
Coord C2 exon
chr19:56972058-56972184
Length
1522 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CATTTGATTTTTCATTTCAGGCA
3' ss Score
8.9
Exon sequences
Seq C1 exon
CCCTGCCTTACCAGCTCTCTGCCCATCTCTCAGTGTGGACCCTAAAGGGGGAGGAAAGGATGCCTTCTGCACGGGGGAAATCCAAATCCAAG
Seq A exon
GTAAGTGGCAATTCCTCTTCCTTCCGGAACACCCCATCGTGTCTTGTGAGATGTGGACCATTTGCTTTCCTTCCATGGAGACTTGTTGCCTGTTGGAGATCCATCCAACACCTAGTCTTTGGTTTTCTCCCGTTGCCATGAGGGATGAGAACCTGAGAAGGGCCCAGCAGCCAGGAAACTGCTCAGCGAGCCTCTCTCCATTCCCAGTGTGCACATGGCCACTGGCCTGTTTGTTTAGCATTCCCAGGGGCTTTGCCAGTGCCAGGAGAAATGCCCTCCCCAAGAGAAATGTCCTCCGTGGAGGAAGATGAGAGCCACTGTGATTTCTCAGCATGGAGATGAATGCCCAGGTGGGGCCTGCAGTAGCAGAGGGGACTTGACATGTGCTCTGGAGTTAGTCTTGTTGTGTGGTTTTGTATCTCCTTGTAAAACCCATATTTACATGGAGGAAATCTCTTTAACTAAGGTCCCAAGACTAAAAGGCACCACATAGCCCTGCTATTCCATTGACTGCACTGGTGCAGGCAGTGAGGTTGTATGCGTAGCCTCCTGTGGTCAGCATGCTCCACGACTGTCAATCATTGAGTGGTTTTTCCAACAGGCATCTCAAATGCAGTTTCCCATAACAAATGTGTTTGCTTTCAGTTGGGTGTATTAGTTGCCCCTTGCTGCTGTAACAGATTAGCTGCAAACTTGGCAGCTCAAAACAGCACGTGTTTATTATCATGCAGTTTTGTGGTTGGCGTCCAGGCACAACATGGTTTAGCTGGGTCATCTGCTTTGGAGTTCACAGGGCTGAAATCAAGGTGTCAGCCGGCTGTGTTCTCATTTGGGGCTCAGGTCCTCTTCCAGACTTGCTGGTTATTGGCCAGATTCAGTTCCTTCCTACACTTTCCACCTGACCCTCATTTTTCATCTTCAAGACAGCAAGAACCAATAACCAACTGGCCAGGTCAAGTCCAAGATAATCTGCCAAGGTCAAGTGATCAGTAACCTTGATTATACCCTCAAAGAACCTTTTGTCATGTGTAACATATTCACATGTTTCTTGGAGAGCAAGTGGTTAGGAGATTAAATCAGGAGCTGTCTGGGCTGAACACTAGCTTCTCCATTTACTAGCTGTGAGACCTGCAGTAAGTTTTCTCATCTCTCTGGGCCTCAGTTTCCTCATCTGTAACATACTGTGATTCCGCTGACAGTGCCTCTATCACTGATTCACATGAGCACTAAGTGAGCCAGTACAGTCAGGTGCTTAGAAGAATGCTTTGACTTTGTAAATGCCTGGTAGATCCAGGTTGCCACGTGTTCTTAATGCAACATAATTTTAATAACAGCTATGTCTTATATTGTATTTTATTTAACTTATTTAATACACCTGCCCCTTTTGGCCTCAGAACCCTGAATGCTTCCTGAATGATTCTTGGTACCTTGTGTCTCCCATGTTTAAGATGTGTGCACCATTTCCTCCAGCCATGTGGAAGCACAAGTCCATGGTGAATAGACATTTGATTTTTCATTTCAG
Seq C2 exon
GCACCTATAACATTTGGGGACTTAGCCATCTACTTCTCCCAGGAGGAGTGGGAATGGCTGAGCCCCATTCAGAAGGATTTGTATGAAGATGTCATGTTGGAGAATTACCGGAACCTGGTCTCGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198046-ZNF667:NM_022103:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCCTTACCAGCTCTCT
R:
GCGAGACCAGGTTCCGGTAAT
Band lengths:
216-1738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)