BtaINT0165986 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018456 | ZNF7
Description
zinc finger protein 7 [Source:HGNC Symbol;Acc:HGNC:13139]
Coordinates
chr14:1517535-1518060:+
Coord C1 exon
chr14:1517535-1517597
Coord A exon
chr14:1517598-1517906
Coord C2 exon
chr14:1517907-1518060
Length
309 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
GGTCTGTGTGCTTGAGACAGCCA
3' ss Score
-1.29
Exon sequences
Seq C1 exon
ATGGGCCTGGACCTAGACCCTCGGCCTCTTGCTGACCCCTTGCCAGTCTCGGGTGTGTCCAAG
Seq A exon
GTAGTGAGCAAACCCTGCTCAGATTGGGCCTGCCTGAGGCTCTTGGGGGAGGGTTGTAGATCCCCATGACCTGGGTCCCTCCCTCTCCTCCATACTGTCCCTCCCCTTGATTTTATTTTATATTTTGGCTACACTGCACAGCTTGCAGGATCTTACTTTCCTGACCAGGGATTGAGCCTGTGCCCCCTACAGTGGGAGCAGAGTCCTGACCACAAGACAGCCAGGGAATTCCTTCCTCCCCTCGATTTTAAAACCAAAGGGGCCTGGTGACTGTCTCACTCAACCTTGTGGTCTGTGTGCTTGAGACAG
Seq C2 exon
CCAGGAGACTGGTGTGTGTCCTTTCAGGAGGCTGTGACATTTGGTGATGTGGCCGTGCACTTCTCGCGGGAGGAATGGCAGTGTCTGGACCCTGGCCAGAGGGCTCTCTACAAGGAGGTGATGCTTGAGAACCACAGCAGTGTGGCTGGACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018456:ENSBTAT00000037366:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=78.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGGACCTAGACCCTC
R:
CTAGTCCAGCCACACTGCT
Band lengths:
214-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development