Special

MmuINT0179737 @ mm9

Intron Retention

Gene
ENSMUSG00000033669 | Zfp7
Description
zinc finger protein 7 [Source:MGI Symbol;Acc:MGI:99208]
Coordinates
chr15:76711169-76711668:+
Coord C1 exon
chr15:76711169-76711212
Coord A exon
chr15:76711213-76711541
Coord C2 exon
chr15:76711542-76711668
Length
329 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
3' ss Seq
GTTGGTGTGTGTCCTTACAGGAG
3' ss Score
9.1
Exon sequences
Seq C1 exon
GTGTCTGACTCAGGACAAGCGGATCCCACCCTCCAGATCTCATG
Seq A exon
GTAGGGAGCCTGGCTGCTGCCTGTATTCCCTCTCCACTCCTGTCAAGCCCCCACATCCTACCCTTTCCACTGGGCCTGATCGCATACCTAGCTTTGACCCTTACTGTGGCTCTGGCCAGGCTGGTCCCTGAGGGGGTGAATAAATGTCCGCCCAGACCAGAGTTTAGCTGTGTCTGTTCAGTGGGGAGGGGCATAAGGTCACTCCTTTGGATTAAGTCCCTTCTTTTCTCATAAGGTTTAAGAGCCAAAAGGATCCAGTCCTGCTGGAGGTATACCATACCTGTTTGAGGTATACCATATTATAGGGATGTTGGTGTGTGTCCTTACAG
Seq C2 exon
GAGGCGGTGACCTTTGGCGACGTGGCTGTGCACTTCTCTCGAGAGGAGTGGCAGTGTCTGGATTCTGGTCAGAGGGCCCTCTACAAGGAGGTGATGCTGGAGAACCACAGCAGCGTGGCAGGACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033669-Zfp7:NM_145916:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion (1st CDS intron)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0135222=KRAB=WD(100=95.3)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000023179





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000023179f5700A
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr8:144829091-144829477 
ALTERNATIVE
HsaINT0188158
(ZNF7)
Human
(hg19)
chr8:146054476-146054862 
ALTERNATIVE
HsaINT0188158
(ZNF7)
Rat
(rn6)
chr7:117950819-117951153 
Cow
(bosTau6)
chr14:1517457-1517933 
BtaINT0165986
(ZNF7)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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