BtaINT0166039 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040381 | ZNF75A
Description
Bos taurus zinc finger protein 75a (ZNF75A), mRNA. [Source:RefSeq mRNA;Acc:NM_001109965]
Coordinates
chr25:2753359-2754356:+
Coord C1 exon
chr25:2753359-2753554
Coord A exon
chr25:2753555-2754264
Coord C2 exon
chr25:2754265-2754356
Length
710 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TGGCTCCATTTCACCCACAGTGG
3' ss Score
7.74
Exon sequences
Seq C1 exon
GTTGCAGTCCAGGAGCTGGGAAAGGAGGCAGTGCTCTTGGGAGAAGCAGCAGAGGCCCCAGGCTTCCAGCTGAAGCCAGCAGAGTCCCAGCCAGTGGGCATGTCCCTGGAGGAAGAAGTTTGGAATATACACCAGGGTCTACAAGAGCCACTGAGCAGGAATACCCACAAAGAACCTGAGCCCGTATGTGAGAGGG
Seq A exon
GTAAGGATCTTCATGTTACTTTTCTTCTCCTGGGAGGTGGGATATAATTTAAGCCAGAATGTGTGTGCACTTTCTGGTTACCCTGCCCTGTGGATCTACTAATGCAGCTACATTAGCAATTAGGATGCCCCCCAGGTGGCGGTAGAATAGGTCATGTGGGGTTGAGGGTGGGGGTTGGCCTAAGATACAGAAATCTCCCAACCGCAGAACCCTGGTAATAACACCAGCAATTGTTTTTAGAAAAGTAAAGATGGTCTGGCTCACCTCATCTTGAAAATACAGAAGAAATCTGGATCAGAATGGGTGGTTAGTGACAGAATGTTAGTAATAGAATGTGTATACTACTGTGTACCAAGGAAAAAGTAATAAATGATTTAAAAACTATTTCCTACTGTATACTGGAGTCCTTGAGTACTTCATTTGCAAATATGTTTAAAGTTTGCCAAGGTGACCAATTTATGTCATCAGAGGAAAATAATAAAAAGAGTTTTCTTTTGTTAATTTTGCTTGTGGAAACTGGGGCACCTGTTGTAGAGGCTGGTAGATACTTGGTTCTCATTAACAAGGAGAAAGCCATTTCTGTGCACCACATGCTTATAAAACATCTCATCAATCCTGAAAAAATCAGGGTCTTCTGTCTTTTAGAACTGACCATAGCATATTAGAAACATAAGCAAGAAATATTTACTATGGCTCCATTTCACCCACAG
Seq C2 exon
TGGGGCCTGCTCACCGGATCCTAGCCTTTCCTGAGCAGACAGACACCAAAGACTGGACAGTGGCACCTGAGCTTGTCTTGCCTGAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040381:ENSBTAT00000053980:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCAGTCCAGGAGCTG
R:
CTGGGACTCAGGCAAGACAAG
Band lengths:
288-998
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]