HsaINT0188287 @ hg19
Intron Retention
Gene
ENSG00000162086 | ZNF75A
Description
zinc finger protein 75a [Source:HGNC Symbol;Acc:13146]
Coordinates
chr16:3361753-3362768:+
Coord C1 exon
chr16:3361753-3361948
Coord A exon
chr16:3361949-3362676
Coord C2 exon
chr16:3362677-3362768
Length
728 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
TGGCTCTTTTCCCCCCACAGCTG
3' ss Score
10.88
Exon sequences
Seq C1 exon
GTTGCAGTCCATGAGCTGGGAAAGGAGGCAGTGCTCTTGGGAGAAACAGCAGAGGCCTCAAGTTTCGGGCTGAAGCCAACAGAGTCCCAACCAGTGGGCGTATCCCAAGATGAAGAATTTTGGAATACATACGAGGGTCTGCAAGAACAGCTCAGCAGGAATACTCATAAAGAGACTGAGCCTGTGTATGAGAGGG
Seq A exon
GTAAGGAGCTTCATGATAATTTTCTTCTCCTGGGAGCTGTGATAATAGTTTATTCACCCAAAATGTCATGGGCATTTTTTGAATACCCTGCTCTGTGGATTTGTAAAACCAGCCTTGATAGCAACTATGATGTCCTTCCAGGCAGCAGTAGAAATGCCAACTGTGGATGAAAGTGGGAGTAGGCCTAGAGAACAGAAATATCTAAACCACAGAACTCTTGGTAATAACAGTGTGAACTCTGTTCCTTAGACTAGTGGAGAGGAAGGAAAGAAATGGAGTGGGAAGGCTTGGGGCCACTTCATCCTTGTAAAATACAGAAGGAATTGAGATCAGATGGGCTGTTAGTGGCAGAATGTGAAAACAGTTGTGTACCAGGAAAAACATAATAAAAGACAAAAAACTTCATCTCCTACCATACAGTGGAGTCCCTGAGTACTTCATTTTAAGATATCTTTAATTTTTGCCTAACTCAGAAAAATATGAGAGGAAAAAGGGATTTCCCTTTTATTTCTCTGATGAAAACTGAGGAAACATTTAGTTGGGGAACTAGTTCTAGGGGCTGGTGGATATTTGATTCTTATTTATGAAGAGACTGCTTCAGGCATCACACACACCACACGTGTAAAGGTGTCCCATCTGTACTTAAAAAGTCAGGATCAGTGTTTTAGAAATGAGCTCAGGATGTTTATAGATAAAAGAGATTTCTTCTGGCTCTTTTCCCCCCACAG
Seq C2 exon
CTGTGCCTACTCAACAGATTCTAGCTTTTCCTGAGCAAACAAACACCAAAGACTGGACAGTGACACCTGAGCACGTCTTGCCTGAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162086-ZNF75A:NM_153028:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTCCATGAGCTGGGAAA
R:
CTGGGACTCAGGCAAGACGT
Band lengths:
286-1014
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)