BtaINT0166042 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040381 | ZNF75A
Description
Bos taurus zinc finger protein 75a (ZNF75A), mRNA. [Source:RefSeq mRNA;Acc:NM_001109965]
Coordinates
chr25:2758379-2761886:+
Coord C1 exon
chr25:2758379-2758489
Coord A exon
chr25:2758490-2758671
Coord C2 exon
chr25:2758672-2761886
Length
182 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCTCACATTTATTCCAGCAGGGC
3' ss Score
6.59
Exon sequences
Seq C1 exon
CATTATTTGTGCTCCCCAAACCTAAAGTGATCTCCTGTCTAGAGCAAGGAGAAGAGCCATGGGTTCAAAGACCCCTGGAGTTCAAGGACAGTTCTGAAGAGCTGCCTGCAG
Seq A exon
GTAAGTAGACCATGGGAAGAAGGGAAATGTGCCATGATAGGAATCTTTGCAAGGATTTCACATTTTATAGTTCTGCTTATCTATTTTTTTAAAAATTAGTGTTTGTCCAGTTTTTCTTTTCATTTACTATGGTTTACTTGCTCTGACATATAGTAAGCTGTTTCTCACATTTATTCCAGCAG
Seq C2 exon
GGCTGAAGCTTAAAAATGACACTGAAAATATTCAGTCTCTATGTCTTTCTGACTTAGAAATACAAGCACCAGTAGCTATAGCATCAAGAAAGGCCAGATTGAAAGTTCCCCAGAAAACAATTGGTAAAGAAAATCATGGTGATGTGCATAGGGTGGGGAAATTGCACCGAGATTTTCCGGTGAAGAAAAAAAAGAAACTTTCAACCTGGAAACAAGAGCTGCTGAAACTTATGGATCTTCAGAAGAAAGAACGTGCAGCAGAAAGGCCTTTTAAATGCCAGGAATGTGGGAAAAGCTTCAGAGTTAGCTCTGACCTCATTAAACACCAGAGAGTTCACACGGAAGAGAAACCATATAAATGTCAACAATGTGATAAGAGGTTTAGGTGGAGCTCTGATCTTAATAAGCACTTAACAACACACCAAGGAATAAAACCATATAAATGCTCATGGTGTGGGAAAGGCTTCAGTCAAAAGACAAATCTCCACACACACCAAAGAACTCACACTGGAGAGAAGCCCTTTACTTGTCATGAATGTGGGAAAAAATTCAATCAAAATTGCCACCTTATTAAACATCGGAGAACTCACACAGGTGAGCAGCCTTACACCTGTACCACGTGCAGGAGGAACTTCAGCAGACGCTCAAGCCTTCTTAGACACCAGAAACTCCACCAGTAAAGGGACGTTTGTTCAGTGTCCTCAGTCTAAAGAAATTTATCAAGTGGAACTTGACTTTAAAGTTAAGAAAAATACAAAATTATGAAGCATGAAGAATTTTTCATCAGGAAACTTTGGGATATAAACATGTGTCATAGAAGGAATCAAGGTTGACTCTTCAAAGGATTTGTTAGTAGTTGCACTACTTGCTATTTTTACTAAAAGCTTCCAGGGAATTCCTTAGCAGGAGAGGTGTCTAAGAACATTCTGAGGAAAGCGAAAAGCTGTTTGGGGATGTATATAGCAAAACAGCAAATTCAGCTTTGCATAGCAGATGCAGCTATGAAATAATCTTTTTTGGCCACAGAGGTAAATATTGTTGGTTTGCATTGATTTCCCAAGGCACTCAAACTTCATATGATGGACACATTTGTATTATAGCATGGTCTTCCAAAACAAAAAGCAATAATATGCATGTTTAGTTGCATACCGTTGTCTTCCAGGTTTGCCAGTTTCAATAATCTCATGGGCAAAAATGAATTGTAATGTAAAACTTTTGAAGAACCTAATTGGATTTTCTTAAGTGTCCCATCATTGGGCGTTGTTCACAAATTTGGACATTGAGTTCCTTGGTTAACTTTTTAGCAAATGCAGCTCTTGAATCCTATTAGTATAATTTTTACTCTGATGAAATATTTTCTTCAGCAATATCGATTCTATCCAGATGAACACATATAATCACTATTTTATGCCTCTCTGCTGGTGAATTAATCACTATTTTATGCCTCTTGAAAAGGGAGAGCACCTCTAAGAAGGAGATAGAATGGAAACAGGTTGGAATCTTTAGCCATGTAAAGAAGAACTTTCTGCAATAAAAGAAACTAGACTCTTTATATCACAATATCGATAGGATAAAACAGCCATGAAAATGAGCACTTTTTTTCAAGGTCTAAATGGAAATTAATGGGAATTCAGGATCATCTTCTCAGGTTTTTATCTGTTTGCATTTTAATTTGGTTTTTGTTTGTTGTTAAGAACAAGGAGAGAGTTACATTTGTCTGGGAACTAGAGTGTTTTCTGCACCAGGATCTTGTGGCTCCCTGGGCATGTTATTCTGGGAATCCAGTGAGCTGGAGACCAAGTTCCCAAAAGGGGAGCTAATGCTGGGTGGCAGGCAAGGATGGACAAATGCACCTCTACATTGGTTAACTTACACTGTAACTGTTAAGCAGGCAAGGACATCCTACTCCTGTTTTCTCCATCCTTTCAGGTAACAGCCTTAGGTTACGAATTTGATAGATTGCTAGAAATCTCCTTAGGTTGTGAGTTTTCTTGTAACTCCCCCTTTTATCTGCTCAGTGATGCAGATATGTTCCTGGTAAAGCATCTAGGTGTAATCAGGAAAGGAGTTAAATTATCTCTCCCAAATCTCTGACTTTATAAAGTAAGGAAGTTAGGCTTAAAGAGATCCAGAGGCTTGTTACAACCACATAGTTAGTGGGTCTGTTGGCTGTCAACTTAGCTGCATCAGTCAGGCCTGAAGGCAGGATCAGCAGAACTGATCTATATGTTGTTCCGGTCCAGCCAGCCTGGATGATATATTGTTTCTAGCTAGTAAAACATGCCTGTTTCTTGATTGGTTACTGAAACATTCTTAAATCTCCATTTTCTTTGTGAAATAGAGATAATGCTTAACTCAGGGTTCTCTGAGGATTAGAGGGATTGATGAAGGAAAAGCACCTGATGATCTGATAGTGGGGTCTCAGACACTGTACACATCCTTCTCTTTCCTCTGAGCCACAGTGGTGTGTTGGGTAGACTGACCACACTGAAGGAGCAGATCCATTTGTGGCTGTTGCAGCTTCTTCCAGGAGCTGAGCACTTGTGGTGGTTTGCTCAGTTGATTTGTTCCTTGGCTTCAGTGCTTTATGGTGTAAGTCACCTGACCTGATGGTGTGTCTCTCTCAGCAGGATTTCATTATCTTCCCTAAGATGAACTCTAGCAAGTATTATTTCCTAAGTGCAGGTAGCTTTGCAGCTCTGGTCTGTATGGATCTTACTGAACATCCTTGGTCTTAAACCCCTGGGATTCTTGTCTCTCCTCCCAATATATACAGGTTTGGATTTCTTGCTGGTGCTACATTCATTCATTCAAGTTAATGAGATCTTGTTATGCGCCCAGGTACTCTTCTAAAGTAAGGATACAGTAGTGGACAAGGATACAAAATGTTTATCCTCATGGACCTTGTATCCTAGTGAACAGTAAGAAGGGAATGGTTAGATGTTTTTGCTTCTTGCAGTTAGGGTCCAGACATAGTTTTGAGCAGTGGGTTACGTGCAGAGGTCTCACTTCTTGGCTGAAACATTTACTTGTTGGTGCAGGACCCTAATGCTGTTTTTTCCTGCCTCAGCCATGTAAGCATATAGAAGAGGAGACAAAATTCAGAACAGTCTGGAATGCCAAGCACCCAACAATGGGGAGCAGTACCTGTTCTGGAGAGTTCCCTAGACCTGTAATGGACTTTGTAGGAAGGATTAATAAACTTTTATTGTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040381:ENSBTAT00000053980:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.137
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=11.0),PF0013017=C1_1=WD(100=22.5),PF134651=zf-H2C2_2=WD(100=11.5),PF134651=zf-H2C2_2=WD(100=11.5),PF134651=zf-H2C2_2=WD(100=11.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAAGGAGAAGAGCCATGG
R:
ATCTCGGTGCAATTTCCCCAC
Band lengths:
243-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]