HsaINT0188290 @ hg19
Intron Retention
Gene
ENSG00000162086 | ZNF75A
Description
zinc finger protein 75a [Source:HGNC Symbol;Acc:13146]
Coordinates
chr16:3366912-3368576:+
Coord C1 exon
chr16:3366912-3367022
Coord A exon
chr16:3367023-3367189
Coord C2 exon
chr16:3367190-3368576
Length
167 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GATTATGTTTATTCCAACAGGGT
3' ss Score
8.39
Exon sequences
Seq C1 exon
CATTGTTTGTGCTCCCCAAACCTAAAGTGATCTCCTGTCTAGAGCAAGGGGAAGAGCCATGGGTTCAAGTATCCCCGGAGTTTAAGGATAGTGCCGGAAAATCTCCTACAG
Seq A exon
GTAAATATACCATGGGAAGTGGAGAAATGTGCCTTGATGTGAACTTTTGCAAGGGCTTAACATTTTAAGATTTTGTTCCTTTTTTTTTTAATCATTGAATTTTTCTTTTTATTCCTGTGATTTGCTTGTTCTGGGATACAGATGTGTGATTATGTTTATTCCAACAG
Seq C2 exon
GGTTAAAGCTCAAAAACGACACTGAAAATCATCAGCCTGTGTCTCTTTCTGACTTAGAAATACAAGCATCAGCAGGCGTCATATCAAAAAAGGCCAAAGTAAAAGTTCCCCAGAAAACAGCAGGCAAAGAAAATCATTTTGATATGCACAGAGTGGGAAAATGGCACCAAGATTTTCCAGTGAAGAAAAGAAAGAAACTTTCAACCTGGAAACAAGAGCTGCTCAAACTTATGGATCGTCACAAGAAAGATTGTGCAAGAGAGAAGCCTTTTAAATGTCAGGAATGTGGGAAAACCTTCAGAGTTAGCTCTGACCTTATTAAGCACCAAAGAATTCACACTGAAGAGAAACCCTATAAATGTCAACAGTGTGATAAGAGGTTTAGATGGAGTTCAGATCTTAATAAGCACTTAACAACACACCAAGGAATAAAACCATATAAATGTTCATGGTGTGGGAAAAGCTTCAGTCAAAATACAAATTTACATACACACCAAAGAACTCATACAGGAGAAAAGCCCTTCACATGTCATGAATGTGGAAAAAAATTCAGTCAGAACTCCCACCTTATTAAACACCGGAGAACCCACACAGGTGAGCAGCCATATACTTGTAGCATATGCAGGAGAAACTTCAGCAGGCGGTCAAGCCTTCTTAGACACCAGAAACTCCACCTGTGAAGAGAAGCTTGTCCAGTGTCCTCATTCTGAAGACATTCACCAAATGGAGCTTGGCACTAAAATTTATGTAAAAGAAAAATCACAAACCTTGAAAAATTTTACATCAGAAAATGGGATAAACATACATTTCACAGAAAATAATCAAGACTTGCTCTGCAGCCACTCAGTAGTCTTCTGTGGTCACAGAAGTAAACATTGTTGGCTTTGTATTGATCTCTCCAGTCATTTTTGAACACATCCAATAGAAACATTGGCAGCATGGTCTTCCAAAACAAAAAGCAGTAACATGCATGTTTAATTGCATACCATTCTCTTCACAGTAGCAGGCTTACCAATTTCCATAGTCTCATGAGGCCGAAATGAATTACAATGTAAAGTGTTCCAGGAACCAAATTGGATTTTCTTTCTTTTGTCATTGGACACGGTTTGCAAAGTTGGACATCACTTGAGTTCCTTCTTAAACTTTTCGGCAACTTCTCTTGGATCCTGTTATCACAGTTTTTTACTGTGATGAAATCTTGTTAACCACCACTAGGGAATCTCCAGATGAACTATTAATGCACTGTCTTATGCCTCTCATTGGTGATGTTTGGAAAATAGAAGACATCTCTAATGGAATCATGGGGGAAACGGGTTGGAATTTGTAGCCATGGAATATATATTAGATGTAAAGAATTTTCTGCAATAAAAGAAACTAGACTTGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162086-ZNF75A:NM_153028:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=NA C2=0.173
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=10.6),PF134651=zf-H2C2_2=WD(100=11.0),PF0013017=C1_1=WD(100=22.5),PF134651=zf-H2C2_2=WD(100=11.5),PF134651=zf-H2C2_2=WD(100=11.5),PF134651=zf-H2C2_2=WD(100=11.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAGAGCAAGGGGAAGAGCC
R:
GGTGCCATTTTCCCACTCTGT
Band lengths:
242-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)