BtaINT0166091 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002445 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:HGNC:27222]
Coordinates
chr4:113148329-113148933:+
Coord C1 exon
chr4:113148329-113148550
Coord A exon
chr4:113148551-113148871
Coord C2 exon
chr4:113148872-113148933
Length
321 bp
Sequences
Splice sites
5' ss Seq
CCGGAGGGC
5' ss Score
-1.97
3' ss Seq
GCAATTATTGCCTATTCTGGCCC
3' ss Score
-2.67
Exon sequences
Seq C1 exon
GGCCCCCAGCCAGTGTCAGCATTTTGTCTTCAGTTAAACGGGAGGAAGACTCTTCAGATGGGGAGTCACCAACCTGCCCTCCCAGGGACATCCTGCCCAGCTTGGGGCCAGGTGAGTGAAGGGAGGAGGCCCCATGGCCTCAGCAGAGCCTCGGGAGACCTCGGGGCCCCTCTGGGAGAGGGGGCGGGCTTGCATGATGGACCTGGGGAGCGCTCTCCTCCG
Seq A exon
GAGGGCGCCTCCCTCACCCCCAAGTCTTACTTCCTGGGGTTCTGAGGACCCGGGTCACCTGTGGTCTGGCTCTTCCCCATCGCCGTCTGCTCTGGCTGGGAAGGTGCTGCTTGCAGACAAGCCACGAGCTGCCAGGGGGCGGTCAGGTGTCACGGCTGCCCTGTGACACAGCCCAGCTGGACCGCCTCTCACGTCTTACAGTTTGATCATGGAGGCTGTGATTGAAATTAGTTCTTTCTGCTGAGAGTCTGTGCATATTCTGTGAACCGGCCTTACACCTCGATAAGCAGGAAAAAGTAAAGCAATTATTGCCTATTCTGG
Seq C2 exon
CCCAATAGAAAGGGATCCAGCCTGCCCCCATTCCACCCGGGTTCTGGCTTTGGGGGAGGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002445:ENSBTAT00000003175:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.986 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCCAGTGTCAGCATTTT
R:
GCCTCCCCCAAAGCCAGAA
Band lengths:
278-599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]