MmuINT0179870 @ mm9
Intron Retention
Gene
ENSMUSG00000079573 | Zfp783
Description
NA
Coordinates
chr6:47899880-47904548:+
Coord C1 exon
chr6:47899880-47899990
Coord A exon
chr6:47899991-47900976
Coord C2 exon
chr6:47900977-47904548
Length
986 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATTCTCATTATAACATTTAGGAT
3' ss Score
5.83
Exon sequences
Seq C1 exon
GGATTCCAGCAAGCACCAGCCCTTTATCACTTAAACAGGAGGAAGAATCTGCAGAGGGAGGAGAGTTGCCACCCTCCCCTTCCACAGATAGCCTGCTTTCTGTGGAGCCAG
Seq A exon
GTGAGTGAAAAGAGAAAACACTAGTGACTGTGCCAGAGCCTCATCGAAGCTCAGAGGGCCTTTGGTAGTAACAGTCAGCCCGTGGTCAACTGGCCTGAATGGAAAATTACTGCTTGAAGACATGCTGCAGATAGAAGACTCTATCTGCTAGTGATAGAAAGGCTGTTCATATATGATCTGCTCCAGTCCTACGGTAACCCTGTGAGGTGGCCTACCGAGATTCACAGCCTCAGGCATCTTGCAGTTTGCATGTTGACCTAGACTTTCAGTGTAGGTCCTTCACCTGGATTCTGGTTTGTTTGGTTTTTTTTGTTTTTGTTTTGTTTTGTTTTTCAGTTTTTCGAGTTTTTCGAGACAGACTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAAACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGAGTAAAGGCATGCGCCACTGCTGCCTGGCTAATTCTATATTTTTTTTTGATAGGGCTCAATGCCAAGACCTTCTATTTTCTGTCTCTGGGGACCACTATCCTCACCTCAGCCTGTGCTTTTCATGGCTCTGTCCCTGCAGTTATTACACTATCACAGTTACACTCTTGCATCAGGTGAGACCTTCACTGAGACCCCACAGGAATCATAGGCTGATTGGGCAGCACACACCTTGGTGGATTTGTTTGGGATGAGTGACATACAGGCAAGTCACTCCCCTCCCTCATCTAGGCCACAGCCTCCCCTCACCCCTTTTTTTGAGGTGGGGTATATGTAGCTGGCTGGCTTTAAACTCACTATGTAACTAAGGCTTGTCTTAAATTTGTGGCAGTTCTCCCATCTCACTTCCTGAGTGCTAGGATCATAGCTACATGTGACACACAAAGCCTCTTAATTTTGGTCTGGAAGCAGTTGGCACTCATGGGCTCCTGATCCTTTTTAGATTGTGACTATTCTCATTATAACATTTAG
Seq C2 exon
GATCTTGCCATCTGTCTCAGAATGAACTCATGGACCTAGATGAGGGAGGGGAGTGACTTGCCTGTATGTCACCCATCCCAAACAAATCCACCAAGGTGTGTGCTGCAGGACTCTATGCAGGGTCCCTGGCCCCTGGCTTTTGCAGCTTGCTTCCTTCTCTGGTGTTCTTAGCTCAGCTTCCAGGAATGAGGCATAAGACAGCAAGCAAAGTTGAACAATACATGAGACACTCCTGCCCCGTGGTGTCTATGACTAGGACCCCTGGCCTGATCTAATGGCACTCACAAAGACTGGGGAAGGGAGGGGAGGCCTGAACCTGGAGTAAGGCCTGGATCGAATGGCAGGGGAAGCCATGAGGTCCCCTTGGAACCAGCAATGATTCCTATGACCATCAAGACAGAAGCCCCATCTGAGGATCAACCTGAGCAGAACCTTCTGCAGTCCTGCAGCCAGTCCGTATTTAGAGTCCACAGAAGGACCAGGATTAAGACCAGGGGCCACAGATGGCATCACACGGATTGGGGAACCTCAGGCAGCAGAGGATATGGGAGAGCCACCCTGTATCCTTCCTCAGCCACAGAAGCAGGCATTCCTGTGCCCTGACTGTGGGCAGAGCTTCTGCTTGAAGATTAATCTGACAATCCATTAGCAGACCCATGTAGAAAAGAAACACAAGGAGGCTTGGAGTGGCTTGCCTATTAGGTCAGGGAAAAGCCACTCCACACTGGAACCAGAGAAAGTGGTGGTGCCAGGCCCTGTCATCCACTGGCCACCTGAGGAGCCCACAAGCCACCGGTCTCCAACAAGCCATGCCTTCATGAGACAAAGGCCAGCAACTACAGTTTACCACTGTAGTGAATGTCTTCACTCCTTTCAGCAACAGAAGAGCCTGGTATTACACCAGCATCAGCACACAGGCAAGAGGCAGAGCTGGCCTGCCTGTCCCTACTGTGGCAAGGCCTCCCGCCGGCCCTCAGACCTCTTTTGTCACCAGTGTATCCATACTGGTGAGCGTTCCTATCAGTGCCCCCAGTGTGGCAAGGAGCCACCACCTGGCTGTCCACATGCAGACTCATTCCTGAGGCTAAACAATCCTGCATTTCCTCTTGCTTTCTGTCCTCCAGGGAAGTCCAGCCCTGCAAGGGCCCAGCTCTGAACAGGACAGGACCTGCACTGTCTCAGGGCCTTTCCCTTGTGCCTGCCAAGTGGTGGAAGTTCCTTCACTTTCCAGCTGAGTTGGTACTTTAGGGGCCCTTCAAAAGCACAAGCTCCAGACCAGGAATTTGAGGTGATAGTGTCATGCCTCAAAGTCATGAGAGCGGGTGCTTCATGTGCCTCTTTGTCACAGCACCTTGGGGACAGCCTTGTGGAGCTTCTGGAGCTGGGTGATGGATTCCAATTCTGATAGTTTGCTCTCTTGTTTGGCACTCAGACACCAGAGCACATGAAGGCTCCCAGGTGCCTTCATCCCTGGCTGTGCTATTGCTAAAGTCCTGCAGACTCTGTAGCCACTCAGAAGTCCTGCACAGACGAGGCAGAGGGTGACACTGCCGTCATTCCCAGGGTAGGGGTATGACTGGCAAGACTGTGGCATGCAGCCATGGTTCTGGACGTTACTTGCCTGCACACCCAACCGTTGTTTAGGCCCTGCAAGCAAGACAGCAGTTGTCAGTAAGCGCTCAGACTGAACGTGGACAGTATAGCTGCCCCAAACTTAATCCTCCGCTGCAAGCACTCATGTTGCTGTTCTGGGGGTTCCTAGGCCTCTCTTCTAATGCTTTAGATGTTCTCTGGAAAACAAGTATTCATATTTGAAGCACAAATCCAAGTGCTGGGGTGGGGGAAGAGGCGCTGTATAATCCTGGCTCGCCTTGGGCTTGCAGTGAATTTTTTTCCCCTACCTCTATCTACCTACTAGGATTTCCTTGCTTGTGCCATTATGCACAACTGGGCTTACTGCATTTAACCTGAAATTCAATAGGACAGGTTAAAGAGTATTTTGAGTTAAGAATGAACAAAGGCTGCATGGTTGCCTGAGCTCAAAGACGTTGGATCCCAGATTCTGATGACTTATTTTGTAAAACAAAGATATGGTTGGGTTGGTTACAAGGCCCTAAGAACCATGGAGGTGGAAATATTAACTTAATCGGTGCTCTATAAATACACTGGAAAATGTAGCTGCGTGTTTGTGGCCTAGTTTGTTCTGGGGAGTCTCAACATGTGACCCTAGTGGTTGGCGTGGCTCTACAGCTCAAAGGTGAACGGAGCTCAACACCTAGTGCTCACACCTGCGGGGCTGAGACGAAACGCTAGCGAACGCTATGCAGCTTGTGCTCCCAGCTAGCCAATAGAGTCTGGCTTCTCTACCGTCAGGGGCGGAACCTCCAGGGCTAGCCAATGGGGAGCCGCCTTGTGGAGGGTGTGGCCTGCGTTTCTGCCGCGGGAGCAGCGAGGACGTCTAGGTCTCAAACTGCCAACTGCGTCCAAGACGACCATCCTGATTCTGTATCGTGAGGCCAGGAAGGGCCGCCTGTAGGGGACACAGCGGCTACAACAAGACGAAGCAGAATCGCGCGCAGCCATGACTGAGGCGGCCGCTGCACCGGTAAGGGTGGCCCTTACCGATCATGTGGGGGATGTGAAGCGGTTCCTGAATTCGCCGGGAGGACATCTTACCACCTCCTAAAATTGGGTAGAGCTCAGCCAGGTAGTCAGGGAGGAGGACTAGGAGGTCTGTTGCCACATGATTAAGTCCTTGTCTCCTTTGCCACGGGTTTGATCATTTGTAATATACGGCCGTTGAGCTTCACCAGGAAATATCTGGGCCCGGTGCACCGGCTGCGGTCGTTTTTACTCCACGACTCCTTTTTTCCAGGACCTCTTTGCTCCATCTCGCAAGTATTAGCCATCTCCGATCAAATCCCGAGCTAAGGCCCCCTCCAGTTAGCCCTCTTGGTCCTGGGACCTAGAATCTAGCTCCTGCCTAGGAGGGAGGGTTCCACGGCCTTTCGGGCCTGAATTCGATTCTATTAAGAGTAGATACATACTTCCTCGCTTGTTGTTTTTTGATGAACACCGGGAAGACTTTCCTACTGCAACTAGTTAGGGAATCAGTGTTATAGAAAACGTTGGGTAGGCGTGTTTTAGGTTCAGGTGAGTGAACTACTGAGATGAGATTTACAGTCCCTGAAGGTAGGAGGCATCTCCTGCTAGCAATAGCTTTGCAGTGACTTCAAAGACATTTCTTGGTGTTAGATTTGTGGCAAAGGATCCCAGAGAGACGAAGATATTTGACCTTTATGTGTGAAGACTGCCTCCTCCCAACCACATTTTGTTGTATGGGTCAGTGGTCACAGACCTCAGGATGGAGTGAGGAAGAGAGAAGTTTCTAGTGACAAGTATCTTACTGTGTGGGACACTTTGCTGTGTCTTTTTTATGGAAGATATCTTGGGGGAAGTTTAATGTCACAAAATTGTATTCGTTACAGTCTTTGGTTTAGAACATATAACACATTCTGACCAATAGTCAGGAACCTTCATGTTTATTGGTAATACAATATATAATAAATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079573-Zfp783:NR_027963:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGCACCAGCCCTTTATC
R:
GGGGCAGGAGTGTCTCATGTA
Band lengths:
343-1329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: